Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019539.1 Length=42391 Score E Sequences producing significant alignments: (Bits) Value seq139038 156 1e-33 >seq139038 Length=11747 Score = 156 bits (172), Expect = 1e-33 Identities = 673/1059 (64%), Gaps = 49/1059 (5%) Strand=Plus/Minus Query 30167 CCGGCGCGGAACGTATCAAGCGCGGTTTCTTCACCAGCCAGCCACGCAAGCCCACGGCCT 30226 ||||| ||||| || || ||| | | |||||||| || ||||| || | |||||| || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 30227 TCGACGTTAGAGTAATCCGCAACAACAAACTTACGCCCGGCTTCCGGG---ATAATGCAG 30283 || ||||||| ||| || |||||||| | ||| | ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCATC---GCTTCCGCTGCAATAATACAA 7862 Query 30284 CTTCGGACGGTAGACGCTGTTAGCTTGGCCACATCAAAACGGCGGTGTGCACGGCCTTTA 30343 |||||| || || || ||||||||||| | ||| | | | | || ||| | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 30344 AGTAACGCGGCAATACCC----------CTATCCAGTT----CA-------------TCG 30376 |||| | |||| | || | | || || ||| Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 30377 TCGTGATAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAAT 30436 ||||| |||||||| || || || || ||||| ||||| ||| ||| ||||| | | Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 30437 GTTCGCTTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCT 30496 |||||||| || || || ||||| || ||||| ||||| ||| | || | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 30497 AACAGCAACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATA 30556 | | ||| |||||| |||||||| || || || || ||||| ||||| || || Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 30557 ATAGTGCGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTC 30616 ||| |||||| ||||| || | ||| ||| | |||| || | | |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTC 7502 Query 30617 TGTGCGTTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTG 30676 || || || | | | ||||||||| || || | | || |||| ||| || Sbjct 7501 TGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCA 7442 Query 30677 CCGGTTAGTGAACC---GCCGTATTTGCGTTGGGCTTCTTCCTGTAGCTCTTCCTTGTGG 30733 ||||| || ||| |||||||||| || || | | || |||| ||| || Sbjct 7441 CCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGC 7385 Query 30734 CGCGTCACTGCTTCAATTGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCG 30793 | | || | | ||| ||| || | || || | ||| || ||||| Sbjct 7384 TCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCA 7325 Query 30794 TTAATTACTTGGTCTAACCAC-AGCACGCGGTCTTCGAACTCAG---AATTCCCCCACTT 30849 ||||| | ||||| || ||| | | |||| ||| | ||| | | |||| | | Sbjct 7324 TTAATGATCTGGTC-AAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCC---ATGT 7269 Query 30850 CGGCATTTTCTTATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCGATAAA 30909 |||| | | | | ||||||||||| || || |||| |||||| | | ||| Sbjct 7268 TGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAA 7209 Query 30910 TTCTGCCCACTCTTTTGGGTGGGTATCGGCGGTATATCGTCGAATCTTATAGTTCTTAGG 30969 | ||| |||| ||||| || | || || || || ||||| || |||||||| Sbjct 7208 GCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGG 7149 Query 30970 CGTAGGCTTACTGAACCGCTGTATGAGCGCCTTACCGCGTTTATCCTTAGCCATGCT-TG 31028 ||| || |||| ||| ||||| || | ||||||||| ||||| || || | ||| Sbjct 7148 CGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGA-GCTCCA 7090 Query 31029 CGTCAATGTTTAAAACCTCACACAGCGTGGCCAGTGAACCCGGGAGGGCGTGTCGGAACG 31088 || || ||||| || || || || | | || |||||||| | |||| |||| | | Sbjct 7089 CGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGG 7030 Query 31089 CTACTATCATAGTGTCTATAATGTTTTCTACCAGGAGTTCGAACCCCCAGCAATGCTTAA 31148 | | | ||| ||||| || |||| || ||| ||| ||||| || | | | Sbjct 7029 CCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCCCAACAGTTCGACA 6970 Query 31149 TAACTGGTCGGTCGAACATAAGGAAGTTTTGGCCTACCA 31187 || |||| ||||||||| | |||||||||||| |||| Sbjct 6969 GCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Score = 138 bits (152), Expect = 3e-28 Identities = 733/1145 (64%), Gaps = 48/1145 (4%) Strand=Plus/Minus Query 25386 TGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAGTGCTCC 25445 ||||| ||||| | || || || || ||||| || ||||| | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 25446 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGGCCGCCGTCCTGTAAATTCAAGCC 25504 | |||||| | | | | ||||| ||||||| || |||||||| || || || | ||| Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 25505 ATGCCCGGCTGACGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCAAGATTC 25564 |||||||| || ||||| | | | || ||| | ||| ||||||| || Sbjct 10655 GTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTC 10596 Query 25565 CATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCGCCTAA 25623 || | || || | || |||||| | | ||| |||| ||||||| | | | Sbjct 10595 GATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCA 10537 Query 25624 GAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCCCCCTGCAACT 25683 | ||||| || | || || | | ||||||||| | ||| ||||| || | | || Sbjct 10536 GGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCT 10477 Query 25684 CCTCGACAATGGACTCTAATGCATCTAGTTTCGCGTCGTGCACTTTCTCCCAGTCTTTCG 25743 | || ||| ||||| | || || || ||| ||| || | ||||||||| | Sbjct 10476 CTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTG 10417 Query 25744 TTGCTTCACCATCCGGCCCTGACACATACACGGCGCCTGATGCAATCTGCAAACACTTCG 25803 | | ||||| || | | | |||||| ||||| || || || |||||||| || || | Sbjct 10416 TCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTAG 10357 Query 25804 ACGTCTTCGCCGCAGCGTTAGCCGCTTCAACTTCTCCGCTC-TCCAGTTCCGCGAATAAC 25862 |||||| ||||| || ||| | || || |||| ||| ||| || || || || | | Sbjct 10356 CCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCAGC 10298 Query 25863 TTCTCCTCCATATCGATGTAAGCCTGGCGTGCTTTCTTAGGCAGGTCAATTTCAACCGGC 25922 || | |||||||| || | | | ||||| ||||||| | | ||| Sbjct 10297 AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGGA 10238 Query 25923 ACGATAACAGGCTCTTCACAACCGAACCACTCAGCAGCATCAATGGTCAGGCTGATATCC 25982 || | || | ||||||||||||||| | | || || || | ||||| ||| || Sbjct 10237 ACTACAATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAGCGAGATGTCG 10178 Query 25983 TTCATCTTCTGATGAAT-CTCTTTATCCGCGCCTGGGC--GGGCGTG-GTACTCCCGCGC 26038 || |||| || | || | || | || ||| ||| || | || | ||| Sbjct 10177 GCCAATGCACGATGTATGCGCTGT-TCTG-ATCTCGGCATGGGTATGAGGTCTACGGCGT 10120 Query 26039 CATCGCAGATTTGCCTTTCTGTACCGAGCTAAACCATCTATCGGTAAAGGCCGTGTATGA 26098 | || | | | |||| || |||| | || | | || | || || ||| | || Sbjct 10119 ATTTGCTG--TCGGCTTTTTGCTTCGAGGTGAAATACCGGTCTTTGAACGCGGTGAAAGA 10062 Query 26099 AGAACCGAGGCGCTCACCAGCGTCTATAAACCAGTTCTGACCCCACAAGTCCTTTAGACC 26158 | || || ||| | ||||| ||||||||||||||||||||||| | ||||| || || Sbjct 10061 TGTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAAGATCCTTGAGCCC 10002 Query 26159 GTTCGGCGACGGCGTACCGGTCAGGTT-----AAT----GA----AACGCTTAACTTTAC 26205 ||| | | |||||||| || | ||| ||| || |||| | ||| | Sbjct 10001 GTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTGACGCCT--TTTTTC 9944 Query 26206 CGA-ACGCCACCTTACTAAGCGCCCTCGCCCTCTTGCTCCCGCCAGAACGGCTACGGAAC 26264 | || | || | ||| || | || | || |||||| ||| | |||||| Sbjct 9943 TTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTAGACCCGCC---ACGCGTTCGGAAC 9887 Query 26265 GATTTCAGCTTCGTGCTCTCATCGGCAACGATAACGGTAAAAGGCCAGTCGTCTTTGCCG 26324 || || ||||| || || |||||||||| ||||||||| ||||| ||||| || Sbjct 9886 GACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATCGTC---ACCA 9830 Query 26325 TAGTAGTCAATAAGCCATTCTATGACTTCGTAATTTGTGCAAACCACGTTAGCGTCTGAC 26384 ||| | | | ||||||| || ||||| || || ||||||||| | || | Sbjct 9829 AGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTATC--CTTA- 9773 Query 26385 TCCAGCG---CCGCGATGCGTCGCT--TCT-CAGAACCAGTTGCATCTACTACACTCAGA 26438 || ||| | | ||| || | || | | || || | || || || ||| Sbjct 9772 -CCGGCGAGTACTTGTTGC--CGATAGGCTACTGGCCCGGTGCCGTCGACGACTTGCAGT 9716 Query 26439 CACGGGAAGTTCCATTTCTCTTGTTCTGCGGGCCACGTACCTGACGCAACGCGCAACGGG 26498 || || |||||| ||||| ||| |||||||||| | ||||||||||||| ||| Sbjct 9715 GCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGCGGC 9656 Query 26499 GCGAG 26503 ||||| Sbjct 9655 GCGAG 9651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135305817420956