Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq138796 228 2e-55 >seq138796 Length=1326 Score = 228 bits (252), Expect = 2e-55 Identities = 259/347 (75%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 1739 AATTCCACTATGCCCATCCCCATGCAGAATCATATTCATTTTTGCGAGTTTTGCATTTGA 1798 ||| |||||||| ||||| ||||||| ||||||||||||||| || | | |||| ||| Sbjct 83 AATACCACTATGACCATCACCATGCAAAATCATATTCATTTTAGCAATTCTTGCCGTTGT 142 Query 1799 GGTAATTTCTCTTCCAAAAATAGTATTATGTTTAAG---CTTGATTTCTTCACTACTATT 1855 || || || || ||| | | ||| | ||||| | || || ||| || |||||| Sbjct 143 CGTTATCTCCCTGCCATATAAAGTGTAGTGTTTCAATATCTCTATATCTGCAGCACTATT 202 Query 1856 GTTTGCAATTAAAGTGTTATCTTTTATATGATCAAATGCCTCTGTTAAAAAACCACCTGT 1915 ||||| | | || ||| | ||||||| ||| || ||||| ||||| || || || Sbjct 203 ------AATTACATTATTGTCTCTAATATGATTAAAAGCTTCTGTCAAAAATCCTCCGGT 256 Query 1916 CCCACAAAAAGGGTCATAGATCTTTTCACCATATTTAGGGTTGACTAAGTTAACAATGGT 1975 ||||||||||| ||||||||| |||| | ||||||| | ||||| |||| ||| || Sbjct 257 TCCACAAAAAGGATCATAGATCGTTTCTTTAAATTTAGGATCAACTAAATTAATAATAGT 316 Query 1976 TTTAGTTATGTGACGTGGAGTAAAATATTCTCCTAAGTCATTATTAGTTGCTGTAGCTTG 2035 |||| |||| | | ||||||||||||||| ||||| ||||| | |||| |||| || Sbjct 317 TTTAATTATATTTCTTGGAGTAAAATATTCACCTAAATCATTCTCGGTTGAAGTAGTTTT 376 Query 2036 CTGTAAGAAATACTCAAAAGCATCTCCTTTAATATCGGTATCTATTG 2082 | || ||||| || || ||||||||||| ||||| |||||||||| Sbjct 377 TTCTAGAAAATATTCGAATGCATCTCCTTTTATATCCGTATCTATTG 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144803708838152