Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq104767 279 1e-70 seq130785 212 2e-50 >seq104767 Length=4578 Score = 279 bits (308), Expect = 1e-70 Identities = 458/672 (68%), Gaps = 35/672 (5%) Strand=Plus/Minus Query 3 GTTCACCATCATGGACCAGGAAATTGCCACTTTAAAACTCAATATCAACCAGCTGGCAGG 62 |||||||||||||||||| ||||| || || | |||||||| || |||||||| || || Sbjct 2889 GTTCACCATCATGGACCAAGAAATCGCGTCTCTCAAACTCAACATTAACCAGCTCGCCGG 2830 Query 63 GATAACCGGCGTACACCGTCAGACGGTTGCCGCGAGACTGAAAAATGTTGAACCTGCTCC 122 |||||| ||||| ||| | || ||||| |||| | | || ||||||||||| || || || Sbjct 2829 GATAACGGGCGTGCACAGGCAAACGGTCGCCGTGCGCCTTAAAAATGTTGAGCCAGCACC 2770 Query 123 AGGCAGCAACAGCAAGTTAAAGCTCTATCTGGTGACCGACATTCTGACCGAACTGATGAT 182 |||||||| || | ||||||| | |||||| || | |||||||| | ||||| Sbjct 2769 GGGCAGCAATGCAAAACTGAAGCTCTTTGCGGTGACAGATGTGTTGACCGAATTAATGAT 2710 Query 183 CCCTACCGTTTCGGCCAACATCGACGATATGCCCCCTTCTGACAGGCTGTCCCACTGGAA 242 ||| || || |||| | | |||| ||| | || || || |||| || || ||||| Sbjct 2709 CCCCACAGTCTCGGGTGATGTGAACGAAATGACACCGTCCGATCGGCTTTCTCATTGGAA 2650 Query 243 AGCAGAGAACGAGAGGCT-GAAGT-----------------------TCGA-----ACAG 273 ||| || |||||| | | ||| | |||| | || Sbjct 2649 AGCTGAAAACGAGCGCATCGAATTTGANNNNNNNNNNNNNGAGCGCATCGAATTTGAGAG 2590 Query 274 GA-TACGGGGCAGTTAATACCCGCAGATGAAGTGGCGCGAGAATTCTCATTGATGGCGAA 332 || | ||||| | || || || || || || || |||||||| || ||||||| || Sbjct 2589 GACTGTCGGGCAACTTATTCCAGCCGAAGACGTCGCTCGAGAATTTTCGATGATGGCAAA 2530 Query 333 AGCCGTCGTCATGGTACTTGAAACCCTCCCGGATGTGCTCGAGCGCGACTGTGCTTTAAC 392 ||||| || |||||| || ||| | ||||| | || |||||||| ||||| | | Sbjct 2529 GGCCGTTGTTCAGGTACTCGAGACCTTGCCGGACATTCTGGAGCGCGATTGTGCGCTGGC 2470 Query 393 GCCTGCTGCGGTAGTTCGTGTGCAAAGCGTTATCGATGATCTGCGCGACCAG-----ATG 447 ||| || || || | || ||||||| | || Sbjct 2469 GCCGGCGGCAGTCATGCGGGTGCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATC 2410 Query 448 GCGGAGAAGGTGCAGGACGCTGGAAAAGAGGAGGAGCAGCCTGAGGAGGACTGATGGCAA 507 ||| | ||||| ||||| | | | |||||||| | |||||||||| ||||||||| Sbjct 2409 GCGCAAAAGGTCATTGACGCAGAACAGGAGGAGGAAACGACTGAGGAGGATTGATGGCAA 2350 Query 508 AGCGGGCATCCGCCAGGGACATCCGCCGCGATGTTTCCGGTATTTTACGAGCCCCGCGTC 567 ||||||| | |||||||||||||| ||||| | ||||| | ||||| ||||| | Sbjct 2349 AGCGGGCGACTGCCAGGGACATCCGAAAAGATGTGGCTGGTATACTTCGAGCACCGCGCC 2290 Query 568 GTATGCCGGTGGCCGATGCGGTCAGTACTTATATGCGCGTGCCAATGGGGGCGGGAAACT 627 | |||| ||| ||||| ||||| ||| |||||||| ||||| |||||||||||||||| Sbjct 2289 GCATGCAGGTTGCCGACGCGGTTAGTCAGTATATGCGTGTGCCGATGGGGGCGGGAAACT 2230 Query 628 CAGTTCCGTGGG 639 | || || |||| Sbjct 2229 CGGTGCCCTGGG 2218 Score = 183 bits (202), Expect = 8e-42 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 906 AACGATAACAACGTCTACGACCGTACATTCCGCGCCGGTAACTATCTGAAGCTGGGCTGG 965 || || ||||||||||||||||| || || ||||| || ||||||||||| | |||||| Sbjct 1914 AATGACAACAACGTCTACGACCGAACCTTTCGCGCTGGCAACTATCTGAAAATCGGCTGG 1855 Query 966 CCATCCGTCAATATCATGTCGTCCTCGGACTATAAAAGTGTGGCGCTGACGGATTATGAC 1025 ||||| | ||||| ||||| || || ||||||||| | || ||||| || || |||||| Sbjct 1854 CCATCGATAAATATTATGTCCTCGTCTGACTATAAATGCGTAGCGCTAACTGACTATGAC 1795 Query 1026 CGCTTTCCGGAAGATATCGACGGGGAGGGGGATGCTTTTTCACTGGCATCGAAACGAACC 1085 ||||| || |||||||||||||| || ||||| | || | |||| ||||| || ||| Sbjct 1794 CGCTTCCCTGAAGATATCGACGGCGAAGGGGACGGGTTCACGCTGGGGTCGAAGCGTACC 1735 Query 1086 ACGACATTCATGTCCTCCGGGATGAC 1111 ||||| || |||||| | || ||||| Sbjct 1734 ACGACGTTTATGTCCGCTGGCATGAC 1709 Score = 179 bits (198), Expect = 1e-40 Identities = 150/180 (83%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 42604 ATTCACGCAAATGATAATCATTATCATTTGC--GGGTCCTCCCGGCAGGGTGGCCT-GCC 42660 || || |||||||||||||||||| |||||| ||||||| |||| ||| ||||| ||| Sbjct 3070 ATCCATGCAAATGATAATCATTATTATTTGCATGGGTCCTTCCGG-AGGAGGGCCTCGCC 3012 Query 42661 ACGGGGCGGCGCGCTCGCGGGAAACGGCTAGTTTTTCGGATCCAGGGTCATCATCATCAA 42720 ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| Sbjct 3011 ACGGGGCGGCGAACTCGCGGAAAACGGCTAGTTTTCGTTATCCAGGGTCATCATCATCAT 2952 Query 42721 GTGCGCAGGTCTTTGATTTAATTAGAGGCCATTTTCGCAAGATGTCGAATCGTTCAAAAA 42780 |||||||| ||||||| | || | | ||||||||||||||||||||||| ||||| Sbjct 2951 CCGCGCAGGTTATTGATTTTAATATGGCCTGTTTTCGCAAGATGTCGAATCGTTTAAAAA 2892 Score = 134 bits (148), Expect = 4e-27 Identities = 322/493 (65%), Gaps = 48/493 (10%) Strand=Plus/Minus Query 1464 CGTCGTTCCCGTATTGCCTCCTTCTGGATGGAAGGTCCGGCAGCTGCTTACCAGACCTGG 1523 || ||||| || |||||||| |||||||||||||| || || || || || || || Sbjct 1327 CGCCGTTCGCGCATTGCCTCGTTCTGGATGGAAGGCCCAGCCGCCGCCTATCAAACGCTT 1268 Query 1524 GCGCAGCTTATTTATAAGTTTCTGACCGCCGAGCAGGAATATG-AATCCACGCGCAGCGA 1582 | ||| | |||||||||| ||| | ||| ||||||| |||| ||| ||| ||||||| Sbjct 1267 TCTCAGTTAGTTTATAAGTTGCTGTCTGCCCAGCAGGATTATGCTATCAACG-GCAGCGA 1209 Query 1583 AGAAACCCTGAAGACGGTGATCAACACCGATTTCGGCAGGCCCTATTTGCCGCGGGCCAG 1642 ||||| |||||| |||| | |||||| || | || ||| ||||| || | |||| Sbjct 1208 GGAAACGCTGAAGGCGGTCACCAACACTGACTGGGGTCTGCCGTATTTTCCTCAATCCAG 1149 Query 1643 CATGGAGCAGCGTAAAAGTGA-------ATTGCTCG-----------------AGCAGCG 1678 | |||| ||||| ||| || || || || ||| || Sbjct 1148 CCTGGAACAGCGCAAATCAGAAACACTGATGGCACGTTCAGAGCCGGTGACTAAGCGCCG 1089 Query 1679 TG---CCGAAGAAGTCC-------------------CAAAACGTTCGGTACCCGATGGCG 1716 || |||| | || | | || || | |||||||| || | Sbjct 1088 TGTACCCGACGGCGTGCGTTTCCTNNGAGCCGGTGACTAAGCGCTGTGTACCCGACGGTG 1029 Query 1717 TGCAGTTTCTCACTGCGACCGTGGACGTGCAGGCCGGGCGCAACCGGCGCTTTGTTGTGC 1776 ||| || || ||| || || ||||| |||| ||| || |||||||| ||||| | Sbjct 1028 TGCGCTTCCTTGTTGCCACGGTTGACGTTCAGGGCGGTAAAAATCGGCGCTTCGTTGTTC 969 Query 1777 AGATTACGGGTTATGGAAGTATGGGTGAGCGCTGGATAGTTGACCGTTACAACATCCGGC 1836 || | || ||||| | || ||||||||||| |||||||| |||||||| || | Sbjct 968 AGGTGGTCGGGTATGGCGCTCAAGGCGAGCGCTGGATTGTTGACCGCTACAACATACGTC 909 Query 1837 ATTCGCTGCGCTGCGACGGCAACGGGGAAAGCATTCAGGTGGATCCGGCGAGCTATCCGG 1896 | ||| |||| | || | ||||| || ||| | | | || || ||| | ||| || Sbjct 908 AATCGATGCGGTTCGGCCCTAACGGAGAGAGCCTACCCATTGACCCTGCGGGATATTTGG 849 Query 1897 AGGACTGGGATCT 1909 ||||||||||||| Sbjct 848 AGGACTGGGATCT 836 Score = 109 bits (120), Expect = 1e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 2130 CCCGACAACACGGGCAGATCAACGCGCCGCGCACAGGCGACGGGTGATGTGCCTCTTTAT 2189 || || ||||| | |||| | | || ||||| ||||| || ||||||||| | ||| Sbjct 577 CCAGATAACACCGACAGACCGAACCGTCGCGCCGAGGCGCGAGGCGATGTGCCTTTATAT 518 Query 2190 CTTCTCCAGACCGATGCCCTTAAAGACCGGGTGAATAATGCGCTGTGGCGTGATTCACCC 2249 ||| | || ||| |||| || ||||||||| | | ||| ||||| || || | | Sbjct 517 CTTTTGCAAACCAATGCACTCAAAGACCGGATCAGTAACGCGCTCGAACGCGAAACGCTG 458 Query 2250 GGCCCTGGCTATGTGCATTTCCCCGCCTGGCTGGGCAGCTGGTTCTATGACGAACTGACG 2309 ||| || |||||||||||| || | ||||||||| ||||||||||||||| |||| Sbjct 457 GGCGCTAACTATGTGCATTTTCCAGACTGGCTGGGAGAGTGGTTCTATGACGAATTGACC 398 Query 2310 TATGAGGA 2317 || || || Sbjct 397 TACGAAGA 390 >seq130785 Length=1492 Score = 212 bits (234), Expect = 2e-50 Identities = 176/215 (82%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 4438 CCACATCAACCTTTATATCAACTCGCCAGGTGGTGATGTCTTCGACGGTATTGCTATTTA 4497 ||| |||||||| |||| |||| || ||||| ||||| ||||||||||||||||| || Sbjct 616 CCATATCAACCTGCATATTCACTCTCCGGGTGGGGATGTGTTCGACGGTATTGCTATCTA 557 Query 4498 TAACGCGCTGAAGCACCACGGCGCGGCGATTACCGTGCATATCGACGGTCTCGCGGCCTC 4557 |||| ||| || ||| ||| | | || ||| |||||||||||||||||||||| Sbjct 556 TAACCTGCTAAATAGCCATCCGGCGTCAAAAACGGTGTATATCGACGGTCTCGCGGCCTC 497 Query 4558 CATGGCCTCGGTGATTGCGATGGTAGGCAATCCGGTCATCATGCCTGAAAACACGATGAT 4617 |||||||| || || ||||||||||| ||||| ||||||||||||||||| | ||||| Sbjct 496 TATGGCCTCAGTTATCGCGATGGTAGGTAATCCCATCATCATGCCTGAAAACGCCATGAT 437 Query 4618 GATGATCCATAAGCCCTGGGGGTTTGCTGGTGGTG 4652 ||||||||||||||||||||| || |||| |||| Sbjct 436 GATGATCCATAAGCCCTGGGGCATTACTGGGGGTG 402 Score = 158 bits (174), Expect = 3e-34 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 3695 AGCCCGGTATGCTCTATGACGAACTGCAGGCCGGGGAAGAAATCGGGATGATTAAATCCG 3754 ||||||| |||||||||||||| | | | || ||||| ||||||||||| ||||| | Sbjct 1458 AGCCCGGCATGCTCTATGACGATTTATTGCCGGGTGAAGACATCGGGATGATCAAATCTG 1399 Query 3755 ATCGCCCGAACCCTAACCTCGAATCTTTTCGTAACGGACAGCTGCGTGCCGTGTCCGCCG 3814 | || || |||| |||||| || | ||||| ||||| ||||| || ||||| |||| | Sbjct 1398 ACCGACCTAACCATAACCTTGAGACGTTTCGAAACGGCCAGCTTCGCGCCGTAGCCGCGG 1339 Query 3815 GCAGTCGCCTCAGCTTTTCCAGCACATCCAGAAACTACAACGGAACGTACAGTGCCCAGC 3874 ||||||| ||| ||| |||||| ||| | ||||| |||||||| ||||| | |||| Sbjct 1338 GCAGTCGGGGCAGTTTTCCCAGCATTTCCCGCAACTATAACGGAACTTACAGCTCTCAGC 1279 Query 3875 GGCAGGAGCTTGTCGAGTCA 3894 | |||||||| || ||| || Sbjct 1278 GACAGGAGCTGGTGGAGGCA 1259 Score = 118 bits (130), Expect = 3e-22 Identities = 158/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 4046 GGCCC-GTTATGCCGTGGATTGATCCCGTTAAAGAAGCGAATGCCTGGAAAACGCAGATC 4104 ||||| ||||||||||||||||| || | ||||| || || | ||| || | Sbjct 1060 GGCCCTGTTATGCCGTGGATTGACCCGCTAAAAGAGGCTAACTCATGGCGCGTGCTACTG 1001 Query 4105 CGCGGCGGTGCTGCTACTGAATCCGACTGGATACGTGCCAGCGGTCGCAACCCGGATGAT 4164 ||||||||||| || || ||| |||||||| || || ||||| || |||| ||| Sbjct 1000 CGCGGCGGTGCAGCGACAGAAGGGGACTGGATCCGCGCACGCGGTGCGAATCCGGGGGAT 941 Query 4165 GTTAAGTCACGCCGTAAAGCGGAGGTTGACGAGAACCGTGAACAGGGACTGGTGTTTGAC 4224 ||||| ||||| || ||||| ||||| || ||| | | | || ||||||| ||| Sbjct 940 GTTAAACGTCGCCGCAAGGCGGAAGTTGATGAAAACAGAAAGCTGGATTTGGTGTTCGAC 881 Query 4225 ACCGACCCCGCCAATGATAAAGGAGGCA-CCAGTGC 4259 || ||||| || ||||||||||| |||| ||||||| Sbjct 880 ACGGACCCGGCAAATGATAAAGG-GGCAGCCAGTGC 846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136548562042984