Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq128896 167 6e-37 seq139046 100 7e-17 >seq128896 Length=1494 Score = 167 bits (184), Expect = 6e-37 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 1221 ATCACCACCGCCGGTTTCAACAAAGAAGGCATCTGCTACGAATTGCGTGATTACGCCATC 1280 ||||||||||| || | ||||||||| || ||||||| ||| ||| ||||| |||||| Sbjct 7 ATCACCACCGCAGGCTCCAACAAAGACGGGATCTGCTTCGAGCAGCGCGATTATGCCATC 66 Query 1281 AAGGTGCTGCGTGGGCTGGTAAAAGACGATACGTTTTTTGCCATTATCTACACCTTAGAT 1340 ||||||||||| || |||| | || ||||| | || || || || || ||| | || Sbjct 67 AAGGTGCTGCGCGGCGTGGTGGAGGATGATACCTACTTCGCAATGATTTATACCCTTGAC 126 Query 1341 GAAGGTGACGATCCCTTTGATGAAAAAGTCTGGCAGAAGGCGAATCCGGGGCTGGGTATC 1400 ||||| || || || ||||| || | ||||| ||||||||||||||||||||| || Sbjct 127 GAAGGGGATGACCCTTTTGACGAGAGGAACTGGCCGAAGGCGAATCCGGGGCTGGGGATT 186 Query 1401 TGTAAGCGCTGGGATGACCTGCGCCGCCTGGC 1432 || ||||||||||| ||| |||| || |||| Sbjct 187 TGCAAGCGCTGGGACGACATGCGTCGTTTGGC 218 Score = 96.9 bits (106), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 1989 TTCCATCACAGCGATCACCCGGTGATGAACTGGATGATGTCCAACGTAACCGTCAAACCT 2048 ||||| ||| || |||| || |||| ||||||||||||||||| |||||||| | Sbjct 857 TTCCACCACGACGGCAACCCCGTCATGACGTGGATGATGTCCAACGTGACCGTCAAGCAC 916 Query 2049 GACCGGAACGAGAACATTTTCCCGAATAAGTCCACACCAGAGGCCAAAATTGATGGCCCT 2108 ||| || || ||| | || ||||| |||||||| || || |||||| ||||| || Sbjct 917 GACAAAAATGACAACGTCTTTCCGAACAAGTCCACGCCGGAAAACAAAATCGATGGACCG 976 Query 2109 GCGGCCTTGTTCACAGCAATGAGCCGCGTTCTGGTTAACGGTGGCAACGACCAGCAGGAT 2168 | || |||| ||||| | |||||| | | || ||||| || ||| | | || Sbjct 977 GTCGCGCTGTTTACAGCGAAAAGCCGCCTGATCGTCAACGGAGG---CGATAAACCAGAC 1033 Query 2169 CTCTCCGGATTCTTCAATAATCCCATCATGGTAGGTTTCTGATGAAA 2215 || | |||| | |||| || ||| ||||| |||||||||| Sbjct 1034 CTGAGTGCGTTCTATGACGATCCGATAATGATAGGTGTCTGATGAAA 1080 Score = 89.7 bits (98), Expect = 1e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 1587 TGGGTGGGCGTTGACCTGTCAAACAAAATTGATATCTGTGCGGCCGCTAAAGTCTGGCGG 1646 ||||| ||| | |||||||| |||||||| || ||||| || || || ||| |||| | Sbjct 411 TGGGTCGGCATCGACCTGTCGAACAAAATCGACATCTGCGCCGCGGCAAAAACGTGGCTG 470 Query 1647 GCGCCAGATGGCCACGTTCATGCGGATTTCAAATTCTGGCTACCGGAAGGACGCCTTGAG 1706 |||| || |||||| || | | | ||||||||| |||| ||||| || ||||| Sbjct 471 TCGCCGGAGGGCCACACGTATTCCAAATATAAATTCTGGATACCAGAAGGGCGGCTTGA- 529 Query 1707 AAATGTTCACG--CCAGATGGCAGAGCTCTATCGTAAGTGGGCCG-GGATGGACAAGCTG 1763 || | | || ||| || || ||||| || || || ||| | | ||| || || | Sbjct 530 -AACGGCCCCGAACCATATCGCCGAGCTTTACCGGAAATGGTCGGCGGAAGGCCACCTAG 588 Query 1764 ATCCTTACCGACGGTGATGTAATCGACCA 1792 | | ||||||||||| || |||||||| Sbjct 589 AGT-TGACCGACGGTGACGTTATCGACCA 616 >seq139046 Length=22897 Score = 100 bits (110), Expect = 7e-17 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 8608 CTGGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCAACG 8667 |||||||||| | ||| |||||||| |||||||||||| ||||| |||||||| || Sbjct 14612 CTGGGAAAGAGTACGAACTCAGCGCTGAAGACGAATTCCTCTGCGAACTCGTCCTTGCCG 14553 Query 8668 GAATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTC 8710 | ||||| |||| ||| |||||||| ||||||||| ||||| Sbjct 14552 GGATCGGGGGCAAAACGATCGCCGAGGCGCGGGAAACGCTCTC 14510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119983958276364