Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq139046 255 2e-63 seq127644 127 5e-25 >seq139046 Length=22897 Score = 255 bits (282), Expect = 2e-63 Identities = 547/811 (67%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 4319 CACTGATCCAGCCTATGCAGATCC---CAGGCATCATCATGCCAGGCCTGCGCCGTCTTA 4375 ||||||| ||||| ||| | || | || || | ||||| || || |||| | | Sbjct 18556 CACTGATTCAGCC---GCAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4376 CCATTCGTGATCTGCTGTCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTG 4435 || | || |||||||| | ||||| || ||| |||| ||| | || || |||||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4436 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCG 4494 || | || |||||||| || | || || || | || || | || ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTGCC-GAAAATACGCTTAAGCCTGAGTCT 18381 Query 4495 GATATCACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCA 4554 | ||||| || | | |||| |||||||| || |||||||||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4555 TCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATG 4614 || ||||| || ||| || | ||||| |||||||||| || || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4615 TACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAAC 4674 ||||| || ||| |||||| ||||| ||||| ||||||||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4675 CTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGAC 4734 |||||||| |||||| || || || ||||| || ||| | | | | ||||| || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4735 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCT 4794 ||| |||||||||| | |||||||| || |||||||| | || || || |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4795 TCCGGTATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAA 4854 || || || | ||||||||| |||||||| ||| |||||||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4855 GGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCA 4914 || || || | || || || |||| || | ||| | | ||||| ||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 4915 GTGGTTCCGACTAAGGCGCAGGCCGTCGGCACCTTTACCGTAGGCGGTTTCGATATGGCC 4974 || ||| | | | |||||| | || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 4975 TCACAGGTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCG----CGA 5030 || || || ||||| ||| || || | | || | || ||| || ||| Sbjct 17900 TCTCAAGTTTGGGACCGCGAAGACGCAAGTAT-CCAGCTCGCAACTCAGAACGGTACCGA 17842 Query 5031 TAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTA 5090 | || |||||||||||| ||||||| || || ||||| || || ||||||||||| || Sbjct 17841 T---TTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGCACTA 17785 Query 5091 TCGCCCGACAGCAATCATCAAGGGCACCTTC 5121 ||||| || || || | || || |||||| Sbjct 17784 CCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 >seq127644 Length=1267 Score = 127 bits (140), Expect = 5e-25 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 6056 GGTGTCCATATTCGTGGTGTTAACCCGCGCACCGGGAACAGCGATAACACTATGAAGGCG 6115 || || || ||||||||| ||||| || || ||||| || || ||||| |||||||| Sbjct 1024 GGCGTGCACATTCGTGGTACGAACCCACGGACAGGGAATAGTGACAACACCATGAAGGCA 1083 Query 6116 AGTAACCCAAGAAACGCCTTTTACTGGCGATTCGTTGAAATGGGTACCGCGAACATGCCT 6175 || || || || | ||||||||| || ||||||||||| || |||| ||| | Sbjct 1084 TCGAATAGAAACAATGCTTATTACTGGCGCTTTGTTGAAATGGGCACGTCGAAAATGGCC 1143 Query 6176 GCACATCCGTTTGTGCGACCCGCTTACGATACTCGCGAGGAAGAGGC--CGCCAGCGTCG 6233 |||||||||||||| || || ||||| | || ||||| | ||| || ||||| | Sbjct 1144 GCACATCCGTTTGTCCGGCCTGCTTATTCTGCTAAGGAGGACGCGGCCACGGCAGCG--G 1201 Query 6234 CCATTGCCAGGATGAATCAGGCTATTGATGAGGTATTGAGCAAGTGAATGAAGATAATAT 6293 | |||||| |||| | ||||||||| |||| | ||| ||||||| ||| | || Sbjct 1202 CATTTGCCAAAGCGAATGAAGCTATTGATAAGGTTCTATCCAAATGAATGAGGATCAAAT 1261 Query 6294 CTA 6296 ||| Sbjct 1262 CTA 1264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132673371229308