Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq139046 255 2e-63 seq43481 161 3e-35 seq1602 95.1 3e-15 >seq139046 Length=22897 Score = 255 bits (282), Expect = 2e-63 Identities = 547/811 (67%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 4412 CACTGATCCAGCCTATGCAGATCC---CAGGCATCATCATGCCAGGCCTGCGCCGTCTTA 4468 ||||||| ||||| ||| | || | || || | ||||| || || |||| | | Sbjct 18556 CACTGATTCAGCC---GCAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4469 CCATTCGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTG 4528 || | || |||||||| ||||| || ||| |||| ||| | || || |||||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4529 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCG 4587 || | || |||||||| || | || || || | || || | || ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTGCC-GAAAATACGCTTAAGCCTGAGTCT 18381 Query 4588 GATATCACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCA 4647 | ||||| || | | |||| |||||||| || |||||||||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4648 TCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATG 4707 || ||||| || ||| || | ||||| |||||||||| || || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4708 TACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAAC 4767 ||||| || ||| |||||| ||||| ||||| ||||||||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4768 CTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGAC 4827 |||||||| |||||| || || || ||||| || ||| | | | | ||||| || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4828 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCT 4887 ||| |||||||||| | |||||||| || |||||||| | || || || |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4888 TCCGGTATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAA 4947 || || || | ||||||||| |||||||| ||| |||||||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4948 GGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCA 5007 || || || | || || || |||| || | ||| | | ||||| ||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 5008 GTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCC 5067 || ||| | | | |||||| || || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 5068 TCACAGGTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCG----CGA 5123 || || || ||||| ||| || || | | || | || ||| || ||| Sbjct 17900 TCTCAAGTTTGGGACCGCGAAGACGCAAGTAT-CCAGCTCGCAACTCAGAACGGTACCGA 17842 Query 5124 TAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTA 5183 | || |||||||||||| ||||||| || || ||||| || || ||||||||||| || Sbjct 17841 T---TTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGCACTA 17785 Query 5184 TCGCCCGACAGCAATCATCAAGGGCACCTTC 5214 ||||| || || || | || || |||||| Sbjct 17784 CCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 Score = 161 bits (178), Expect = 3e-35 Identities = 469/716 (66%), Gaps = 17/716 (2%) Strand=Plus/Minus Query 2401 GACTGCTGCGCTACTCACCGAATCAGTACATGACCGCCCAAGAATTCAGGGAGGCCATGA 2460 ||||||| || || || |||| ||||||| || | |||||| | || || |||| Sbjct 20502 GACTGCTACGGAACAGCCCAAATCCTTACATGAACGGTCTGGAATTCCGCGAAGCAATGA 20443 Query 2461 CGATGCAGCT--CTGTTTCTACGGTAACGCATATGCACTTGTGGACCGCAACAGCGCAGG 2518 ||||| | || | | || |||| ||||| || ||| | || || ||||| | || Sbjct 20442 CGATGAACCTAACGGCTT--ACGGCAACGCCTACGCATTGGTTGAACGCAATGTGGTCGG 20385 Query 2519 TGACGTGATCAGCCTACTCCCGCTTCAGTCTGCCAATATGGATGTGAAACTCG------- 2571 ||||||||||| || | || |||| ||||| ||||| || ||| | Sbjct 20384 GGACGTGATCAGTCTTTTACCCCTTCTTAGCGCCAACATGGACGTTCGACTTGATGACCA 20325 Query 2572 --TCGGaaaaaaaGTGGTTTATCGCTATCAACGCGACAGCGAATACGCCGACTTTTCGCA 2629 || || ||||| | |||||||| || | | | | || || || ||| | Sbjct 20324 AACAGGCAAGAAAGTTATCTATCGCTACAGCCGTGCCGGAAAGTATGCTGATTTTAGCCC 20265 Query 2630 GAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACCGGGCTTGTAGGCCTGTCACCCAT 2689 | | ||||| |||||| ||||||| |||||||||| ||| || || || |||| || | Sbjct 20264 GGATGAGATATTTCACATTAAAGGTTTCGGATTCAACGGTCTGGTCGGTGTGTCGCCACT 20205 Query 2690 TGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTTGCGATGGAGGACCAGCAGCGAGATTT 2749 || || | ||| | ||||| ||||| | || |||||||| | | || || || Sbjct 20204 CGCGTTCTCTGCGAAAGCCGCAGGCGTGGCGATCGCCATGGAGGATAATAAACGCGACTT 20145 Query 2750 CTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTCTCAACTGGCGAAAAAGTGCT-AACTG 2808 |||||| |||||||| || ||||| | || | || ||||| ||| | || || | Sbjct 20144 CTTTGCTAACGGCGCTAAATCTCCACGTATTTTAAGCACAGGCGATAAAATCCTCGACAG 20085 Query 2809 AACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAAGAGATCGCCGGCGGCCCGGTaaaaa 2868 | ||||||| | ||| | ||||||||| ||||||| ||||| |||||||| || Sbjct 20084 -AGAGCAGCGAGCACAGTTGCGCGAGAACTTCGAAGAGATTGCCGGTGGCCCGGTCCGAA 20026 Query 2869 aaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACATCGGCAATTGGCGTAACTCCGCAGG 2928 |||| | |||||| |||| | || ||| | || | |||||| || ||| | | Sbjct 20025 AACGTTTATGGATTTTGGAGGGTGGGTTTACATCAGAGCAAATTGGGGTTGACCCGAATG 19966 Query 2929 ATGCCGAAATGATGGCGTCCCGAAAATTTCAG-GTAAGTGAACTGGCGCGATTCTTTGGC 2987 | || | ||| | | || | | || ||||| ||| || || ||| |||| | || Sbjct 19965 ACGCACAGATGCTTGAATCGC-AGAAATTCAGTGTAGCAGAGCTCGCGAGATTTTACGGT 19907 Query 2988 GTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGCTGGGGATCGGGCATCGAG 3047 || || ||| | | || || || |||||||| || ||||| | || | ||| Sbjct 19906 GTTCCTCCTTTCATGGTAGGAGAGACGGAGAAATCTACCTCTTGGGGTACAGGGCTAGAG 19847 Query 3048 CAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCCCTATATCTCCAGGTGGGA 3103 || || || |||| || ||||| | || || | || || || | ||||||| Sbjct 19846 CAACAAAACCTCGCATTTATGCAGCAGACGCTTAAACCGTACCTCGACCGGTGGGA 19791 Score = 100 bits (110), Expect = 7e-17 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 8171 CTGGGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCAACG 8230 |||||||||| | ||| |||||||| |||||||||||| ||||| |||||||| || Sbjct 14612 CTGGGAAAGAGTACGAACTCAGCGCTGAAGACGAATTCCTCTGCGAACTCGTCCTTGCCG 14553 Query 8231 GAATCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTCTC 8273 | ||||| |||| ||| |||||||| ||||||||| ||||| Sbjct 14552 GGATCGGGGGCAAAACGATCGCCGAGGCGCGGGAAACGCTCTC 14510 >seq43481 Length=83004 Score = 161 bits (178), Expect = 3e-35 Identities = 262/377 (69%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 30780 TTTGTCTCAATTGCAACGCCTATAATCTTGCAGTTTCCATTGATTGGCACGAGAGGCCAT 30839 || ||||| | || ||||| || || ||| || |||||||| || || | ||||| Sbjct 67775 TTAGTCTCGACGGCGACGCCAATGATGCGGCAATTGCCATTGATCGGAACCATCGGCCAG 67834 Query 30840 GCAGGATTAAGTCCCTTGAGGTATTTATTTCCGCCGTCGATTATCAGCTTCTTGAATGTT 30899 || ||||| | ||||| |||||||| | ||||| || | | ||||||||| || Sbjct 67835 GCGGGATTTAACCCCTTAAGGTATTTCTGGTTACCGTCTATCACTAACTTCTTGAACGTC 67894 Query 30900 GCTTCGTTAGAGTCAGAAAGTTTTGCTATGACCAAGCTGCCGTTGACCGCCTCCCTTCCG 30959 |||||||| | || | ||||| || || || | |||||||| ||||| | ||| Sbjct 67895 GCTTCGTTGGCATCGGTCAGTTTGGCGATCACTAGTTTGCCGTTGGTGGCCTCTTTGCCG 67954 Query 30960 GTATCGAAAAGAACGAATGTTCCCTCTGGAATGCTTAACCCAACCGGTGCCGTCATTGAA 31019 || || || || || || || || || |||||||| | ||| | || || ||||| || Sbjct 67955 GTGTCAAACAGGACAAAGGTCCCTTCAGGAATGCTGAGCCCCATGGGGGCGGTCATCGAG 68014 Query 31020 TCACCTTCCACTTTAAGCCAGAACGCATTACCTTGAATATGCGCGTCAGACTCAAGCCAA 31079 ||||| || || | ||| || | | || |||||||||||||||||||||||||| Sbjct 68015 TCACCGTCAACCAGTAACCAAAATCCCTCGCCCTGAATATGCGCGTCAGACTCAAGCCAG 68074 Query 31080 ACATCTATGTCTTTAATGGTGTATGGTTCGCATGCTTCACACCACGAGCCAGCCTGGATA 31139 || || ||||| | | | || | || ||||| ||| | || ||||||| Sbjct 68075 TGGTCGATATCTTTTAGGCTATAAGCCTCAATGGCTTCGTTCCAGGCACCGGCCTGGACC 68134 Query 31140 CTGCTTAACACCGGATA 31156 |||||| ||||||||| Sbjct 68135 TTGCTTATCACCGGATA 68151 >seq1602 Length=1372 Score = 95.1 bits (104), Expect = 3e-15 Identities = 100/139 (72%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 32527 AATAAAAACATCTCAGAATGGTGTATCCCTCAAAACGAGGGAAANNNNNNNNNNNNNNNN 32586 ||||||||| ||||||||||| | |||||||||||||||| | Sbjct 754 AATAAAAACGTCTCAGAATGGGACACCCCTCAAAACGAGGGAGAATCCCTCAAATTAGGG 813 Query 32587 NNNNNAACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGAC 32646 | |||||||||||||||| || | |||||||||||||||||||||| | |||| Sbjct 814 GATAAAGAATCCCTCAAATTGGGGTATCGGCATCCCTCAAAACAGGGGGACACCATAGAC 873 Query 32647 ACTAATACAAAAGAAAAAA 32665 | || ||| ||||| |||| Sbjct 874 ATTATTACCAAAGACAAAA 892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129935499401344