Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019716.1 Length=44510 Score E Sequences producing significant alignments: (Bits) Value seq104767 187 7e-43 seq130785 152 1e-32 seq28727 98.7 3e-16 seq105608 89.7 1e-13 >seq104767 Length=4578 Score = 187 bits (206), Expect = 7e-43 Identities = 165/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 924 AATGACAACAACGTTTATGACAGAACATTCCTTGCTGGCAACTACCTGAAAATCGGCTGG 983 |||||||||||||| || ||| |||| || | ||||||||||| ||||||||||||||| Sbjct 1914 AATGACAACAACGTCTACGACCGAACCTTTCGCGCTGGCAACTATCTGAAAATCGGCTGG 1855 Query 984 CCGTCAGTCAATATCATGTCCTCATCAGATTATAAATGCGTGGCGCTGACGGATTATGAC 1043 || || | ||||| |||||||| || || ||||||||||| ||||| || || |||||| Sbjct 1854 CCATCGATAAATATTATGTCCTCGTCTGACTATAAATGCGTAGCGCTAACTGACTATGAC 1795 Query 1044 CGTTTTCCGGAAGATATTGATGGCGAGGGGGATGCCTTCTCTCTTGCCTCAAAACGTACC 1103 || || || |||||||| || ||||| ||||| | ||| | || | || || |||||| Sbjct 1794 CGCTTCCCTGAAGATATCGACGGCGAAGGGGACGGGTTCACGCTGGGGTCGAAGCGTACC 1735 Query 1104 ACCACATTTATGTCCAGTGGTATGAC 1129 || || ||||||||| ||| ||||| Sbjct 1734 ACGACGTTTATGTCCGCTGGCATGAC 1709 Score = 95.1 bits (104), Expect = 3e-15 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1482 CGACGCTCACGTATTGCGTCATTCTGGATGGAGGGGCCGGCAGCTGCTTACCAGACACTC 1541 || || || || ||||| || ||||||||||| || || || || || || || || || Sbjct 1327 CGCCGTTCGCGCATTGCCTCGTTCTGGATGGAAGGCCCAGCCGCCGCCTATCAAACGCTT 1268 Query 1542 TCGCAACTCGTTTACAAACTGCTTACTGCAGAACAGGAATACGAGACAACCGGAAGTGAA 1601 || || | ||||| || |||| |||| | ||||| || | | | ||| || || Sbjct 1267 TCTCAGTTAGTTTATAAGTTGCTGTCTGCCCAGCAGGATTATGCTATCAACGGCAGCGAG 1208 Query 1602 GAAACACTCAAGACGGTTATCAATACCGACTGGGGATTACCTTATCTTCCCCGCGCCAGC 1661 ||||| || ||| |||| | ||| || |||||||| | || ||| |||| | ||||| Sbjct 1207 GAAACGCTGAAGGCGGTCACCAACACTGACTGGGGTCTGCCGTATTTTCCTCAATCCAGC 1148 Query 1662 ATGGAGCAACGAAAAAGTGAACTGCT--TGAGCAGCGGGCAGAGCCAGTTCCTTCCCGCA 1719 |||| || || ||| ||| || || ||| || ||||||| || || ||| Sbjct 1147 CTGGAACAGCGCAAATCAGAAACACTGATG-GCA-CGTTCAGAGCCGGTGACTAAGCGCC 1090 Query 1720 GTGTGCCGGATGGCGTTAATTTCCT 1744 |||| || || ||||| |||||| Sbjct 1089 GTGTACCCGACGGCGTGCGTTTCCT 1065 Score = 93.3 bits (102), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 2106 GGCGACAGCATCCGGCGCGCA--AAACTGATCAGCCGTACATTCCCTGATAACACCGGAC 2163 || ||||||| || |||||| ||| |||| | || | || |||||||||| Sbjct 619 GGAGACAGCA--CGACGCGCAGTAAATTGATAACTAAAACCCTGCCAGATAACACCGACA 562 Query 2164 GAACGGGCCGACGGGCGCAGGCCGCAGGTGATGTGCCGCTCTGGCTTCTTCAGACGGATG 2223 || || ||| || || |||| ||| |||||||| | | ||| | || || ||| Sbjct 561 GACCGAACCGTCGCGCCGAGGCGCGAGGCGATGTGCCTTTATATCTTTTGCAAACCAATG 502 Query 2224 CCCTGAAAGACCGGGTGAATAACGCGTTATGGCGTGACTCGCCAGGTCCCGGCTATGTGC 2283 | || ||||||||| | | ||||||| | || || ||| || | |||||||| Sbjct 501 CACTCAAAGACCGGATCAGTAACGCGCTCGAACGCGAAACGCTGGGCGCTAACTATGTGC 442 Query 2284 ATTTCCCTGACTGGCTGGGAAGCTGGTTTTACGACGAACTGACGTATGAAGA 2335 |||| || |||||||||||| ||||| || |||||| |||| || ||||| Sbjct 441 ATTTTCCAGACTGGCTGGGAGAGTGGTTCTATGACGAATTGACCTACGAAGA 390 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 566 TATCCTTCGCGCACCGAGACGAATGCGGGTTGCTGATGCCGTTGCTCAGTATATGCGGGT 625 ||| ||||| |||||| | || |||| |||||| || || ||| |||||||||||| || Sbjct 2309 TATACTTCGAGCACCGCGCCGCATGCAGGTTGCCGACGCGGTTAGTCAGTATATGCGTGT 2250 Query 626 GCCCATGGGGGCAGGGAACTCAGTCCCGTGGG 657 ||| |||||||| || ||||| || || |||| Sbjct 2249 GCCGATGGGGGCGGGAAACTCGGTGCCCTGGG 2218 >seq130785 Length=1492 Score = 152 bits (168), Expect = 1e-32 Identities = 176/233 (76%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 4060 GCGGTGTATTCCGGACCGGTGATGCCGTGGATTGACCCTGTTAAGGAGGCTGAGGCCTGG 4119 || ||||| ||| || || ||||||||||||||||| | || |||||| | | ||| Sbjct 1072 GCCGTGTACAGCGGCCCTGTTATGCCGTGGATTGACCCGCTAAAAGAGGCTAACTCATGG 1013 Query 4120 AAAATTCAGATTCGTGGTGGAGCAGCGACAGAATCAGACTGGGTACGTGCAGGTGGTCGT 4179 | | | || || || |||||||||||| |||||| | || ||| | ||| Sbjct 1012 CGCGTGCTACTGCGCGGCGGTGCAGCGACAGAAGGGGACTGGATCCGCGCACGCGGTGCG 953 Query 4180 AATCCGGATGATGTCAAACGTCGGCGCAAGGCCGAAATTGATGAAAACCGCAAGCTGGAT 4239 ||||||| ||||| |||||||| |||||||| ||| ||||||||||| | ||||||||| Sbjct 952 AATCCGGGGGATGTTAAACGTCGCCGCAAGGCGGAAGTTGATGAAAACAGAAAGCTGGAT 893 Query 4240 CTGGTATTTGATACCGATCCGGCCAGTGATAAAGGAGGCAG-CAGTGCCGCAA 4291 |||| || || || || ||||| | ||||||||| ||||| ||||| ||||| Sbjct 892 TTGGTGTTCGACACGGACCCGGCAAATGATAAAGG-GGCAGCCAGTG-CGCAA 842 Score = 152 bits (168), Expect = 1e-32 Identities = 192/264 (73%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 3693 CAAGGATAAGGAACGCGAGCTTACCATTCAGCCAGGCATTATTTACGACGATCTGAAACC 3752 ||||||| | || | ||| | | || |||| ||||| | || |||||| | || Sbjct 1487 CAAGGATGACGACAGAGAGGTCAATATAGAGCCCGGCATGCTCTATGACGATTTATTGCC 1428 Query 3753 CGGCGAAGAAATCGGAATGGTGAAGTCGGATCGTCCCAATCCTAACCTTGAAACTTTTCG 3812 || ||||| ||||| ||| | || || || || || || | ||||||||| || ||||| Sbjct 1427 GGGTGAAGACATCGGGATGATCAAATCTGACCGACCTAACCATAACCTTGAGACGTTTCG 1368 Query 3813 TAATGGTCAGTTGCGTGCCGTGGCGGCGGGCAGTCGTCTGAGTTTTTCCAGTACAGCGCG 3872 || || ||| | || ||||| || ||||||||||| |||||| |||| | | || Sbjct 1367 AAACGGCCAGCTTCGCGCCGTAGCCGCGGGCAGTCGGGGCAGTTTTCCCAGCATTTCCCG 1308 Query 3873 CAACTATAACGGCACTTACAGCGCCCAGCGTCAGGAGCTGGTTGAATCCACTGATGGCTA 3932 |||||||||||| ||||||||| | ||||| ||||||||||| || | ||| ||||| Sbjct 1307 CAACTATAACGGAACTTACAGCTCTCAGCGACAGGAGCTGGTGGAGGCATTTGAAGGCTA 1248 Query 3933 CCTGATCCTGCAGGACTGGTTTAT 3956 | || |||||||| |||||| Sbjct 1247 CAGCATACTGCAGGATGCGTTTAT 1224 >seq28727 Length=1947 Score = 98.7 bits (108), Expect = 3e-16 Identities = 242/366 (66%), Gaps = 16/366 (4%) Strand=Plus/Plus Query 29760 CTTTGGTCTTCGCTTCGACAGATTCCATCAGGGAGCGTTTGCCGCTGAAGTCATTATCTT 29819 ||||| |||| || ||||| | |||||| |||||||||||| ||| |||||| ||||| Sbjct 271 CTTTGCTCTTGGCCTCGACGGTTTCCATGAGGGAGCGTTTGGCGCCAAAGTCAGAATCTT 330 Query 29820 CAAAATCAGCGGTCTGGTTTGCT-------TCAATCGTGATTTTACGGACTGCCGCAGCC 29872 || |||||| ||||| || |||||||||||||| || | ||| Sbjct 331 CA-------TGGTCTGAATTGCTGGAAGACTCGATCGTGATTTTACGCACACCGGCAATA 383 Query 29873 GCTTTTGTTGCCTGAATAGCGTCACCATTAGC-ATCAAAGCCCACAAGGTAGTCGGCCCA 29931 |||||| | | | | | || || | || | || ||| ||| || || ||||| Sbjct 384 GCTTTTTTGATATCTAAAACTTCGCCGTCTGCGGTGAATGCCAGCAA-ATATTCAGCCCA 442 Query 29932 GTCTTCAATCCATTCTGCCAGTGACTTCTGGGAGTTACGCTCGCCGTTAACAGACAACAG 29991 ||||| | ||| || ||||| |||||| || || |||||| | | || ||| Sbjct 443 ATCTTCCAGCCACTCAGCCAGCTCTTTCTGGCGATTTTTCTGGCCGTTGATATTCAGCAG 502 Query 29992 GGCAGAGAACGGTGCTGTCTTTTTCAGTTTGAGAGTGGCGGTGTTATCTGCGTGACCTGG 30051 || || || || || || || || || | | || || ||||| || ||||| || Sbjct 503 CGCTTTAAATGGGGCCGTTTTCTTGAGCTTTAACGCTGCAGTATTATCCGCATGACCCGG 562 Query 30052 TTCATCAATAGTACCCAGGTTAAGTACACTGACGGCACGCATATTATCAGCATCGATAAA 30111 || | || || |||||||||| || | || || ||| | ||||| || ||||| Sbjct 563 CTCGTTGATGGTGCCCAGGTTAAACACGGTCACCGCCTCCATGCTTTCAGCGTCAATAAA 622 Query 30112 GCAGCG 30117 || ||| Sbjct 623 GCTGCG 628 >seq105608 Length=1395 Score = 89.7 bits (98), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 31593 CCATTCGCGGTAAATCTGATTATCAGAAATTACCAGCAGTTTATCAGGTATCATTTGCAG 31652 ||| || || || | | ||||||||||| || || |||| || ||||||||||| Sbjct 768 CCAATCCCGATATTTTTCATTATCAGAAAGAACAAGGAGTTCATTTTTCATCATTTGCAG 827 Query 31653 TCGTTTGAC--GTAAATTTTATCATCAAAACCAAATACATATATACCATCCCCATCAAAC 31710 ||||| || | | ||| || || || | || ||||| || ||||| |||||||| Sbjct 828 ACGTTTTACATGGAGCGTTTGTC--CATAAGCGAAAACATAAATTCCATCACCATCAAAA 885 Query 31711 TGATTGATACTGATATCAACGAAGATGAGATCTCCTGGCTCAATGGTTGGACACATACTG 31770 || |||||| ||| ||||| || || ||| || |||||||||||| | ||| || Sbjct 886 TGCTTGATATTGACATCAATAAAAATTTCATCACCAGGCTCAATGGTTCCTCTCATGCTA 945 Query 31771 TCCCCACGAACGTTGATAACTTTAA 31795 || || ||| |||| | ||||| Sbjct 946 TCGCCTTTAACTGTGATGATTTTAA 970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142075421158944