Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq139046 260 4e-65 seq84049 201 3e-47 seq17393 86.0 2e-12 >seq139046 Length=22897 Score = 260 bits (288), Expect = 4e-65 Identities = 552/815 (68%), Gaps = 24/815 (3%) Strand=Plus/Minus Query 4319 CACTGATCCAGCCGATGCAGATCC---CCGGCATCATCATGCCAGGACTGCGCCGTCTGA 4375 ||||||| |||||| || | || | || || | ||||| || || |||| ||| Sbjct 18556 CACTGATTCAGCCG---CAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4376 CCATTCGTGACCTGCTGGCGCAGGGCCGCATCTCCAGCAACGCTCTGGAATACGTCCGTG 4435 || | || || ||||| |||||| || | |||||||| | || ||| | |||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4436 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCCGAGAAAGCGCTGAAGCCCGAATCG 4494 || | || |||||||| || | || || || |||| || |||| ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTG-CCGAAAATACGCTTAAGCCTGAGTCT 18381 Query 4495 GATATCACCTTCAGTAAGCAAACCGCGAACGTGAAGACGATCGCCCACTGGGTGCAGGCA 4554 | ||||| || | |||| |||||||| || ||||| |||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4555 TCGCGTCAGGTTATGGACGATGCGCCAATGCTGCAGTCATACGTCAACAACCGCCTCATG 4614 || |||||| || || || | ||||| |||| ||| |||| || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4615 TACGGCCTGGCGCTGAAGGAGGAAGGTCAACTGCTGAACGGTGACGGTACCGGGGATAAC 4674 ||||| || |||| ||| || || |||||||| ||||| ||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4675 ATCGAAGGTTTGAACAAAGTGGCCACCGCTTACGACACCTCGCTGAATGCCACTGGCGAC 4734 | ||||||||||||| || || || || ||||| ||| | | | | || || || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4735 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACAGAGTCTGAGTTTAGCGCT 4794 ||| |||||||||| | |||||||| || |||||||| | || || ||| |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4795 TCCGGTATTGTCCTGAACCCGCGGGACTGGCACAACATCGCGCTGCTGAAAGACAATGAA 4854 || || | | ||||||||| |||||||| ||| ||| |||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4855 GGCCGCTATATCTTCGGTGGTCCTCAGGCGTTTACCAGCAACATCATGTGGGGCCTGCCA 4914 || || || | || || || |||| |||| | || | | ||||| |||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 4915 GTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACGGTGGGCGGTTTCGATATGGCC 4974 || ||| | | | |||||| || || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 4975 TCTCAGGTCTGGGATCGCATGAATGCCACCGTGGAAGT---CAGC-CGTGAC---GACCG 5027 ||||| || ||||| ||| ||| | | |||| |||| || || || || Sbjct 17900 TCTCAAGTTTGGGACCGC--GAAGAC------GCAAGTATCCAGCTCGCAACTCAGAACG 17849 Query 5028 CGA-CAACTTCGTGAAAAACATGCTGACCATTCTGTGCGAAGAGCGCCTGGCGCTGGCGC 5086 | | | || |||||||||||| |||||||||| || ||||| ||||| |||||||||| Sbjct 17848 GTACCGATTTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGC 17789 Query 5087 ACTATCGCCCGGCGGCCATCATCAAGGGCACTTTC 5121 |||| ||||| | ||||| | || || || ||| Sbjct 17788 ACTACCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 Score = 87.8 bits (96), Expect = 5e-13 Identities = 204/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 3366 AGGGGATTTTTGAAGGCTACGCCTCTGTTTTTAATAACACCGATTCCGATGGCGACATCA 3425 |||| | |||||||| || || || || |||| | |||| ||| | || ||| Sbjct 19481 AGGGCGTCTTTGAAGGATATGCTTCGGTATTTAGTGTTGTCGATGCCGTTCAGGATGTCA 19422 Query 3426 TTCTGCCCGGGGCGTTTAAAAACGCACTGGCGAACCAGACCCGCAAAGTGGCGATGTTTT 3485 | ||||||| |||||| || ||||| |||| || || |||||||||| Sbjct 19421 TCATGCCCGGCGCGTTTTCTAATACACTGAAAAACCGCGATCGTGCTGTAGCGATGTTTT 19362 Query 3486 TCAACCACAAGACGTGGGAGCTGCCGGTTGGTAAATGGGACAGCCTGGCAGAAGACGAAA 3545 ||||||| || | | || | || || |||||||||| | |||| ||||||||| | Sbjct 19361 TCAACCATAACAGCTATGATATCCCAGTCGGTAAATGGGTCGACCTGAAAGAAGACGACA 19302 Query 3546 AAGGCCTGTATGTGCGCGGTCAACTTACCCCAGGGCACAGCGGCGCCGCCGACCTGAAAG 3605 ||||||| | ||||| || | | || || || | || || |||| | | Sbjct 19301 AAGGCCTATTCGTGCGAGGAGAGTTAACGCCCGGCCTAAGTAAGTCCAGCGACATTTTGG 19242 Query 3606 CGGCAATGCAGCACGGTACGGTTGAAGGTATGTCGGTTGGCTTTTCCGTTGCGAAAGACG 3665 | |||||| | || || || || ||||||||||| ||||| ||| | |||| | Sbjct 19241 CTGCAATGAAACATGGAACCGTGACCGGTATGTCGGTCGGCTTCAGCGTCGGTAAAGGGG 19182 Query 3666 ATTACACC 3673 |||||||| Sbjct 19181 ATTACACC 19174 >seq84049 Length=1054 Score = 201 bits (222), Expect = 3e-47 Identities = 233/314 (74%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 10013 GAACAGTATTCCCGGAAAATGGCCGATCTGAGTGTGGCTATCGACGTGCAACGCGTTCGG 10072 || ||||| | || ||||||||||| || | ||||||||||| || || || ||| Sbjct 727 GAGCAGTACGCGCGCAAAATGGCCGACCTCACCGTGGCTATCGAAGTTCAGAAAGTGCGG 786 Query 10073 GCCACGGAAGGCGAAAAAGCCTCGGAGCTTTACTCTGCATCGCACCAGGCAGGCACTAAA 10132 | || || || ||||| ||||||||||||||| | || || |||||||| || || ||| Sbjct 787 ACGACCGAGGGAGAAAAGGCCTCGGAGCTTTACGCGGCTTCCCACCAGGCGGGGACGAAA 846 Query 10133 TGGACCGACGAGCAGCGCAAGGCGATCCAGGCATCATCAGCAGAGCTGGCAAAATGGACG 10192 ||||| || || ||||||||||| || | || || | | || |||| || ||||||| Sbjct 847 TGGACGGAGGAACAGCGCAAGGCAATTCGAGCCTCGGCCACCGAACTGGAAACATGGACG 906 Query 10193 CAAAAAGCCGACGAGAACGTGCGCAAGCAGCGCGAACAAGCTGATGCCCTGAAGGATTTA 10252 || || ||||| | ||||| || || || || || || || |||||||||||||| Sbjct 907 CAGAAGGCCGATGCAAACGTAAAAAAACAACGTGAGCAGGCAGAGGCCCTGAAGGATTTG 966 Query 10253 ACTGAAGCGGCCCGAAAGTTCAGGGATGAGGCGACGCTGACAACCGAAACCGCAGGCATG 10312 |||||||| || || | | |||||||| |||||||||||| | || || || || Sbjct 967 GGAGAAGCGGCGCGGAAATATCGCGATGAGGCCACGCTGACAACCCAGACAGCCGGTCTG 1026 Query 10313 AGTGATCGCCAGCG 10326 ||||| || ||||| Sbjct 1027 AGTGACCGGCAGCG 1040 Score = 123 bits (136), Expect = 6e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 9749 AATGCTACGCCACAACAGCAAACGGCCCTTGAACGAGCACGCCGTGATAACGAGATGGCC 9808 || || ||||||||||| ||||| | || |||||| || ||||| || | | Sbjct 423 AAAGCGACGCCACAACAAGCGACGGCTTTAGAGAAAGCACGACGCGATAATGAACTATCA 482 Query 9809 AGCCTCAGCGGCTTAGAGAAACTCCATCAGCAGCACGTCTACGAAGCAGAAGATCTGAAG 9868 || |||||| | ||||| | |||| ||| | |||||||| || ||||| || Sbjct 483 AGTTACAGCGGTCTTGAGAAGCAACATCGTCAGTTCCAGTACGAAGCGGACGATCTCAAA 542 Query 9869 CTGACGGGGGCTCTTTACACCCAGTACATCTACAACAAGGATCAGGCAGCCAAAAAGGAT 9928 || || || ||| | | ||||||||| | ||||||||||||||||| |||||||||||| Sbjct 543 CTTACCGGTGCTATGTGGACCCAGTACGTTTACAACAAGGATCAGGCGGCCAAAAAGGAT 602 Query 9929 GCAGCAGCTGCAGAGGCAAAAAA 9951 || || ||||| || |||||||| Sbjct 603 GCCGCCGCTGCCGAAGCAAAAAA 625 >seq17393 Length=1625 Score = 86.0 bits (94), Expect = 2e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 13982 TCATATGCATTCGGTGGTGTAACAAACACCGCGGCGCAAGGCTACCCGGTACCGCTCCTT 14041 || ||||| |||||||| ||||| | ||||||||| | ||||| || | ||| Sbjct 803 TCCTATGCTTTCGGTGGGCCCGTTAACACTGTTGCGCAAGGCAATCCGGTGCCAATTCTT 862 Query 14042 TATGGCCGTCGGCGGATAGGCGGAGCGATTATTTCTGCCGGAATTTATGTCGAAGATCAG 14101 |||||||| || || || || || |||||||| || ||||||||||| | ||||| ||| Sbjct 863 TATGGCCGCCGCCGCATTGGGGGGGCGATTATCTCCGCCGGAATTTACGCTGAAGACCAG 922 Query 14102 CAGTA 14106 || || Sbjct 923 CAATA 927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127759897633732