Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019767.1 Length=40155 Score E Sequences producing significant alignments: (Bits) Value seq139046 255 2e-63 seq127644 111 4e-20 >seq139046 Length=22897 Score = 255 bits (282), Expect = 2e-63 Identities = 547/811 (67%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 4319 CACTGATCCAGCCTATGCAGATCC---CAGGCATCATCATGCCAGGCCTGCGCCGTCTTA 4375 ||||||| ||||| ||| | || | || || | ||||| || || |||| | | Sbjct 18556 CACTGATTCAGCC---GCAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4376 CCATTCGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTG 4435 || | || |||||||| ||||| || ||| |||| ||| | || || |||||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4436 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCG 4494 || | || |||||||| || | || || || | || || | || ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTGCC-GAAAATACGCTTAAGCCTGAGTCT 18381 Query 4495 GATATCACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCA 4554 | ||||| || | | |||| |||||||| || |||||||||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4555 TCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATG 4614 || ||||| || ||| || | ||||| |||||||||| || || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4615 TACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAAC 4674 ||||| || ||| |||||| ||||| ||||| ||||||||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4675 CTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGAC 4734 |||||||| |||||| || || || ||||| || ||| | | | | ||||| || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4735 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCT 4794 ||| |||||||||| | |||||||| || |||||||| | || || || |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4795 TCCGGTATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAA 4854 || || || | ||||||||| |||||||| ||| |||||||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4855 GGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCA 4914 || || || | || || || |||| || | ||| | | ||||| ||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 4915 GTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCC 4974 || ||| | | | |||||| || || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 4975 TCACAGGTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCG----CGA 5030 || || || ||||| ||| || || | | || | || ||| || ||| Sbjct 17900 TCTCAAGTTTGGGACCGCGAAGACGCAAGTAT-CCAGCTCGCAACTCAGAACGGTACCGA 17842 Query 5031 TAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTA 5090 | || |||||||||||| ||||||| || || ||||| || || ||||||||||| || Sbjct 17841 T---TTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGCACTA 17785 Query 5091 TCGCCCGACAGCAATCATCAAGGGCACCTTC 5121 ||||| || || || | || || |||||| Sbjct 17784 CCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 Score = 161 bits (178), Expect = 3e-35 Identities = 469/716 (66%), Gaps = 17/716 (2%) Strand=Plus/Minus Query 2308 GACTGCTGCGCTACTCACCGAATCAGTACATGACCGCCCAAGAATTCAGGGAGGCCATGA 2367 ||||||| || || || |||| ||||||| || | |||||| | || || |||| Sbjct 20502 GACTGCTACGGAACAGCCCAAATCCTTACATGAACGGTCTGGAATTCCGCGAAGCAATGA 20443 Query 2368 CGATGCAGCT--CTGTTTCTACGGTAACGCATATGCACTTGTGGACCGCAACAGCGCAGG 2425 ||||| | || | | || |||| ||||| || ||| | || || ||||| | || Sbjct 20442 CGATGAACCTAACGGCTT--ACGGCAACGCCTACGCATTGGTTGAACGCAATGTGGTCGG 20385 Query 2426 TGACGTGATCAGCCTACTCCCGCTTCAGTCTGCCAATATGGATGTGAAACTCG------- 2478 ||||||||||| || | || |||| ||||| ||||| || ||| | Sbjct 20384 GGACGTGATCAGTCTTTTACCCCTTCTTAGCGCCAACATGGACGTTCGACTTGATGACCA 20325 Query 2479 --TCGGaaaaaaaGTGGTTTATCGCTATCAACGCGACAGCGAATACGCCGACTTTTCGCA 2536 || || ||||| | |||||||| || | | | | || || || ||| | Sbjct 20324 AACAGGCAAGAAAGTTATCTATCGCTACAGCCGTGCCGGAAAGTATGCTGATTTTAGCCC 20265 Query 2537 GAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACCGGGCTTGTAGGCCTGTCACCCAT 2596 | | ||||| |||||| ||||||| |||||||||| ||| || || || |||| || | Sbjct 20264 GGATGAGATATTTCACATTAAAGGTTTCGGATTCAACGGTCTGGTCGGTGTGTCGCCACT 20205 Query 2597 TGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTTGCTATGGAGGACCAGCAGCGAGATTT 2656 || || | ||| | ||||| ||||| | || |||||||| | | || || || Sbjct 20204 CGCGTTCTCTGCGAAAGCCGCAGGCGTGGCGATCGCCATGGAGGATAATAAACGCGACTT 20145 Query 2657 CTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTCTCAACTGGCGAAAAAGTGCT-AACTG 2715 |||||| |||||||| || ||||| | || | || ||||| ||| | || || | Sbjct 20144 CTTTGCTAACGGCGCTAAATCTCCACGTATTTTAAGCACAGGCGATAAAATCCTCGACAG 20085 Query 2716 AACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAAGAGATCGCCGGCGGCCCGGTaaaaa 2775 | ||||||| | ||| | ||||||||| ||||||| ||||| |||||||| || Sbjct 20084 -AGAGCAGCGAGCACAGTTGCGCGAGAACTTCGAAGAGATTGCCGGTGGCCCGGTCCGAA 20026 Query 2776 aaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACATCGGCAATTGGCGTAACTCCGCAGG 2835 |||| | |||||| |||| | || ||| | || | |||||| || ||| | | Sbjct 20025 AACGTTTATGGATTTTGGAGGGTGGGTTTACATCAGAGCAAATTGGGGTTGACCCGAATG 19966 Query 2836 ATGCCGAAATGATGGCGTCCCGAAAATTTCAG-GTAAGTGAACTGGCGCGATTCTTTGGC 2894 | || | ||| | | || | | || ||||| ||| || || ||| |||| | || Sbjct 19965 ACGCACAGATGCTTGAATCGC-AGAAATTCAGTGTAGCAGAGCTCGCGAGATTTTACGGT 19907 Query 2895 GTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGCTGGGGATCGGGCATCGAG 2954 || || ||| | | || || || |||||||| || ||||| | || | ||| Sbjct 19906 GTTCCTCCTTTCATGGTAGGAGAGACGGAGAAATCTACCTCTTGGGGTACAGGGCTAGAG 19847 Query 2955 CAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCCCTATATCTCCAGGTGGGA 3010 || || || |||| || ||||| | || || | || || || | ||||||| Sbjct 19846 CAACAAAACCTCGCATTTATGCAGCAGACGCTTAAACCGTACCTCGACCGGTGGGA 19791 >seq127644 Length=1267 Score = 111 bits (122), Expect = 4e-20 Identities = 174/246 (71%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 6056 GGCGTCCATATTCGTGGCGTTAACCCGCGCACCGGAAACAGCGATAACACGATGAAGGCT 6115 ||||| || |||||||| ||||| || || || || || || ||||| |||||||| Sbjct 1024 GGCGTGCACATTCGTGGTACGAACCCACGGACAGGGAATAGTGACAACACCATGAAGGCA 1083 Query 6116 AATAACCCGAGAAAC---GCCTTTTACTGGCGATTCGTTGAGCTGGGTACCGCGAACATG 6172 || |||||| || | ||||||||| || ||||| |||| || |||| ||| Sbjct 1084 TCGAAT---AGAAACAATGCTTATTACTGGCGCTTTGTTGAAATGGGCACGTCGAAAATG 1140 Query 6173 CCTGCACATCCGTTTGTGCGACCCGCTTACGATACTCGCGAGGAAGAGGC--CGCCAGCG 6230 | |||||||||||||| || || ||||| | || ||||| | ||| || ||||| Sbjct 1141 GCCGCACATCCGTTTGTCCGGCCTGCTTATTCTGCTAAGGAGGACGCGGCCACGGCAGCG 1200 Query 6231 TCGCCATTGCCAGGATGAATCAGGCTATTGATGAGGTATTGAGCAAGTGAATGAAGATAA 6290 || |||||| |||| | ||||||||| |||| | ||| ||||||| ||| | Sbjct 1201 --GCATTTGCCAAAGCGAATGAAGCTATTGATAAGGTTCTATCCAAATGAATGAGGATCA 1258 Query 6291 TATCTA 6296 ||||| Sbjct 1259 AATCTA 1264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128162431881484