Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq139046 255 1e-63 seq84049 221 3e-53 >seq139046 Length=22897 Score = 255 bits (282), Expect = 1e-63 Identities = 547/811 (67%), Gaps = 16/811 (2%) Strand=Plus/Minus Query 4319 CACTGATCCAGCCTATGCAGATCC---CAGGCATCATCATGCCAGGCCTGCGCCGTCTTA 4375 ||||||| ||||| ||| | || | || || | ||||| || || |||| | | Sbjct 18556 CACTGATTCAGCC---GCAAACCCTGCCGGGTATTTTGATGCCGGGTCTTACCCGTTTGA 18500 Query 4376 CCATTCGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTG 4435 || | || |||||||| ||||| || ||| |||| ||| | || || |||||| Sbjct 18499 CCGTCCGCGATCTGCTTTTGCAGGGTCGTACTACCAGCAACAGCATCGAGTACATGCGTG 18440 Query 4436 AAGAGGTGTTTACCAATAACGCCG-ACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCG 4494 || | || |||||||| || | || || || | || || | || ||||| || || Sbjct 18439 AAAACGTATTTACCAACTCGGCTGCACCTGTTGCC-GAAAATACGCTTAAGCCTGAGTCT 18381 Query 4495 GATATCACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCA 4554 | ||||| || | | |||| |||||||| || |||||||||||| || || Sbjct 18380 AACATCACTTTTACCGCCGAAACTGCGAACGTTCGCACTATCGCGCACTGGCTGACCGCC 18321 Query 4555 TCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATG 4614 || ||||| || ||| || | ||||| |||||||||| || || | ||| Sbjct 18320 TCTAAACAGGTTCTGTCTGACGCCGCTATGCTCGAGTCCTACATCAATGCTCGATTGATG 18261 Query 4615 TACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAAC 4674 ||||| || ||| |||||| ||||| ||||| ||||||||||| ||||| | || Sbjct 18260 TACGGTTTGCAGCTGGTGGAAGACGGCCAACTGCTCAACGGCGACGGCACCGGCCAAAAT 18201 Query 4675 CTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGAC 4734 |||||||| |||||| || || || ||||| || ||| | | | | ||||| || Sbjct 18200 CTGGAAGGTTTGAACACCGTTGCGACAGCCTACGATACCGGGATTACGGTTACCGGTGAT 18141 Query 4735 ACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCT 4794 ||| |||||||||| | |||||||| || |||||||| | || || || |||| Sbjct 18140 ACCGCCGCTGACATTCTGGCTCACGCCATCTATCAGGTTGCGTTATCCGAATTTGACGCT 18081 Query 4795 TCCGGTATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAA 4854 || || || | ||||||||| |||||||| ||| |||||||| ||||| | | | Sbjct 18080 TCGGGCCTCATTCTGAACCCGTTAGACTGGCATCGCATTGCGTTGCTTAAAGATACTCAG 18021 Query 4855 GGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCA 4914 || || || | || || || |||| || | ||| | | ||||| ||||| Sbjct 18020 GGTAATTACATTCTGGGCGGCCCGCAGGTGTTTGCGTCTAAACTGCTCTGGGGTCTGCCA 17961 Query 4915 GTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCC 4974 || ||| | | | |||||| || || || || || || || |||||| |||| || Sbjct 17960 GTTGTTACTTCAACCCAGCAGGCGGCGGGTACGTTCACTGTTGGTGGTTTCAATATCGCT 17901 Query 4975 TCACAGGTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCG----CGA 5030 || || || ||||| ||| || || | | || | || ||| || ||| Sbjct 17900 TCTCAAGTTTGGGACCGCGAAGACGCAAGTAT-CCAGCTCGCAACTCAGAACGGTACCGA 17842 Query 5031 TAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTA 5090 | || |||||||||||| ||||||| || || ||||| || || ||||||||||| || Sbjct 17841 T---TTTGTGAAAAACATGGTGACCATTCTTTGTGAAGAACGCCTTGCGCTGGCGCACTA 17785 Query 5091 TCGCCCGACAGCAATCATCAAGGGCACCTTC 5121 ||||| || || || | || || |||||| Sbjct 17784 CCGCCCAACCGCCATTGTGAAAGGGACCTTC 17754 >seq84049 Length=1054 Score = 221 bits (244), Expect = 3e-53 Identities = 248/329 (75%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 10014 GAACAGTATTCCCGGAAAATGGCCGATCTGAGCGTGGCTATCGATGTGCAACGCGTCCGG 10073 || ||||| | || ||||||||||| || | |||||||||||| || || || ||| Sbjct 727 GAGCAGTACGCGCGCAAAATGGCCGACCTCACCGTGGCTATCGAAGTTCAGAAAGTGCGG 786 Query 10074 GCCACGGAAGGAGAAAAAGCCTCTGAGCTTTACGCGGCGTCGCACCAGGCAGGCACTAAA 10133 | || || |||||||| ||||| |||||||||||||| || |||||||| || || ||| Sbjct 787 ACGACCGAGGGAGAAAAGGCCTCGGAGCTTTACGCGGCTTCCCACCAGGCGGGGACGAAA 846 Query 10134 TGGACCGACGAGCAGCGCAGAGCAATCCAGGCATCATCAACAGAGCTGGCAAAATGGACG 10193 ||||| || || ||||||| ||||| | || || | || || |||| || ||||||| Sbjct 847 TGGACGGAGGAACAGCGCAAGGCAATTCGAGCCTCGGCCACCGAACTGGAAACATGGACG 906 Query 10194 CAAAAAGCCGACGAGAACGTGCGCAAGCAGCGCGAACAGGCTGATGCCCTGAAGGATTTA 10253 || || ||||| | ||||| || || || || ||||| || |||||||||||||| Sbjct 907 CAGAAGGCCGATGCAAACGTAAAAAAACAACGTGAGCAGGCAGAGGCCCTGAAGGATTTG 966 Query 10254 ACTGAAGCGGCCCGAAAGTTCAGGGATGAGGCGACGCTGACAACCGAAACCGCAGGCATG 10313 |||||||| || || | | |||||||| |||||||||||| | || || || || Sbjct 967 GGAGAAGCGGCGCGGAAATATCGCGATGAGGCCACGCTGACAACCCAGACAGCCGGTCTG 1026 Query 10314 AGTGATCGTCAGC-GCAGCCGGTTCGATG 10341 ||||| || |||| |||| |||| |||| Sbjct 1027 AGTGACCGGCAGCGGCAG-AGGTTTGATG 1054 Score = 156 bits (172), Expect = 1e-33 Identities = 184/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 9714 CCGCCGCAATATGCCGGGCCCGTCGTCTCACTGGCGAATGCAACGCCTCAACAGCAAACT 9773 ||||||||||||||||| || ||||| || || ||||| || ||||| ||||| || Sbjct 387 CCGCCGCAATATGCCGGACCGGTCGTATCCCTCGCGAAAGCGACGCCACAACAAGCGACG 446 Query 9774 GCACTGGAGCGCTCGCGCCGCGATAATGAGCTAGCCAGCTTAAGCGGATTAGAGAAACTC 9833 || | ||| | || ||||||||||| ||| | || | ||||| | ||||| | Sbjct 447 GCTTTAGAGAAAGCACGACGCGATAATGAACTATCAAGTTACAGCGGTCTTGAGAAGCAA 506 Query 9834 CATCAGCAGCACGTCTACGAAGCAGAAGACCTGCAGCTGACGGGGGCGCTTTACACCCAG 9893 |||| ||| | |||||||| || || || | || || || || | | |||||| Sbjct 507 CATCGTCAGTTCCAGTACGAAGCGGACGATCTCAAACTTACCGGTGCTATGTGGACCCAG 566 Query 9894 TACATCTACAACAAGGATCAGGCAGCCAAAAAGGATGCAGCAGCTGCAGAGGCaaaaaaa 9953 ||| | ||||||||||||||||| |||||||||||||| || ||||| || |||||||| Sbjct 567 TACGTTTACAACAAGGATCAGGCGGCCAAAAAGGATGCCGCCGCTGCCGAAGCAAAAAAG 626 Query 9954 aCCTCTACC 9962 | | ||||| Sbjct 627 AGCGCTACC 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124357524825352