Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq2788 201 1e-46 seq6040 114 1e-20 >seq2788 Length=136445 Score = 201 bits (222), Expect = 1e-46 Identities = 352/500 (70%), Gaps = 18/500 (4%) Strand=Plus/Plus Query 146509 GGACTGAACAACGTGATGTAATCGTTTTTAATCAATCGTTCAATCATGAGGTCGTTAATT 146568 || ||||||| ||||||| || ||||| || || | | ||| || | ||| || Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 146569 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 146628 || || || || || | ||| |||| ||||| | |||||||| ||||| ||||| Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 146629 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCACCGCCA 146688 || |||||| |||| ||||| || ||||| ||||| || ||| || || |||||||| Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 146689 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAG-CT--AAGTGAGTTTTCCAGAATGGA 146745 || | |||||| ||||| || |||||||| | | || ||||| | | |||| || Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTAT---AGAACGGG 19456 Query 146746 ATAACGCCTGTATGACGAA--CTTCACCAGCGCCAATCTTAGAACCTTCAGCACG-ATAC 146802 ||| ||| ||||| ||| ||||||| ||| |||| ||| ||||| || | Sbjct 19457 ATACAGCCGGTATG--GAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGC 19514 Query 146803 ATTCCAGCATTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTTTGT 146860 ||||| || | || ||||| || || | ||| | ||||| | ||| || || Sbjct 19515 GG-CCAGCGTTGATGCCGATACCTGCGCGCTG--TGAAACGTATTTCACGATGGCGCTGG 19571 Query 146861 TTACTGCGTTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACT 146920 ||||| || ||| || || ||||| | || || | |||||||| ||||||| Sbjct 19572 AGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACT 19631 Query 146921 GGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATC-TGACGTTTA 146979 |||||||||| || || || |||| ||||||||| ||||||||||||||| ||| | || Sbjct 19632 GGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTT- 19690 Query 146980 GATACGGCATTATAGAAACG 146999 || || |||| ||||||||| Sbjct 19691 GAAACCGCATCATAGAAACG 19710 >seq6040 Length=129903 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 74898 AATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCT 74957 ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||| Sbjct 118356 AATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCTCT 118297 Query 74958 AACCATCTGAGCTAAAGGGCC 74978 ||||| ||||||||| ||||| Sbjct 118296 AACCAACTGAGCTAAGGGGCC 118276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539122133825040