Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq139046 259 1e-64 seq17393 100 7e-17 >seq139046 Length=22897 Score = 259 bits (286), Expect = 1e-64 Identities = 515/760 (68%), Gaps = 16/760 (2%) Strand=Plus/Plus Query 13460 ATTGCCGTCGGGCGATAGTGCGCCAGCGCCAGGCGCTCTTCACACAGGATTGTCAGCATG 13519 || || || ||||| |||||||||||||| ||||| |||||||| || || |||| |||| Sbjct 17770 ATGGCGGTTGGGCGGTAGTGCGCCAGCGCAAGGCGTTCTTCACAAAGAATGGTCACCATG 17829 Query 13520 TTTTTCACGAAGTTATCG----CGGTCT---TCACG-GCTGACTTCCACGGTGGCATCCA 13571 |||||||| || |||| || ||| | || |||| | | | || || Sbjct 17830 TTTTTCACAAA---ATCGGTACCGTTCTGAGTTGCGAGCTGGATAC-----TTGCGTCTT 17881 Query 13572 TGCGATCCCACACCTGCGAGGCCATATCAAAACCGCCCACCGTAAAGGTGCCAGCGGCCT 13631 ||| ||||| || || || || |||| ||||| || || || || || || || |||| Sbjct 17882 CGCGGTCCCAAACTTGAGAAGCGATATTGAAACCACCAACAGTGAACGTACCCGCCGCCT 17941 Query 13632 GCGCCTTAGTCGGAACCACTGGCAGGCCCCACATGATGTTGCTGGTAAACGCCTGAGGAC 13691 || | | | ||| |||||||| ||||| | | || | |||| |||| || | Sbjct 17942 GCTGGGTTGAAGTAACAACTGGCAGACCCCAGAGCAGTTTAGACGCAAACACCTGCGGGC 18001 Query 13692 CACCGAAGATATAGCGGCCTTCGTTGTCTTTCAGCAGCGCGATGTTGTGCCAGTCGCGCG 13751 | || | || || || | | ||||| |||| ||| ||| |||||||| || Sbjct 18002 CGCCCAGAATGTAATTACCCTGAGTATCTTTAAGCAACGCAATGCGATGCCAGTCTAACG 18061 Query 13752 GGTTCAGGACGATACCGGAAGCGCTAAACTCAGACTCTGTCACCTGGTAAATAGCGTGAG 13811 ||||||| | || || |||||| ||| || || | ||||| || || ||||||| Sbjct 18062 GGTTCAGAATGAGGCCCGAAGCGTCAAATTCGGATAACGCAACCTGATAGATGGCGTGAG 18121 Query 13812 CGATAATGTCAGCGCGGGTGTCGCCAGTGGCATTCAGCGAGGTGTCGTAGGCGGTTGCCA 13871 | | |||||||||| ||| || || || | | | | ||| |||||||| || || | Sbjct 18122 CCAGAATGTCAGCGGCGGTATCACCGGTAACCGTAATCCCGGTATCGTAGGCTGTCGCAA 18181 Query 13872 CTTTGTTCAGACCTTCCAGGTTATCCCCGGTACCGTCGCCGTTCAGCAGCTGGCCTTCTT 13931 | |||||| ||||||||| || | ||||| ||||||||||| ||||| ||||| |||| Sbjct 18182 CGGTGTTCAAACCTTCCAGATTTTGGCCGGTGCCGTCGCCGTTGAGCAGTTGGCCGTCTT 18241 Query 13932 CCTTCAGCGCCAGACCGTACATGAGGCGGTTGTTGACGTATGACTGCAGCATTGGCGCAT 13991 || |||| || ||||||||| | || |||| ||| |||| ||||| | || | Sbjct 18242 CCACCAGCTGCAAACCGTACATCAATCGAGCATTGATGTAGGACTCGAGCATAGCGGCGT 18301 Query 13992 CGTCCATAACCTGACGTGACGCCTGCACCCAGTGGGCGATGGTCTTCACGTTTGCGGTCT 14051 | || |||||| || || || |||||| ||||| || ||||| || || | Sbjct 18302 CAGACAGAACCTGTTTAGAGGCGGTCAGCCAGTGCGCGATAGTGCGAACGTTCGCAGTTT 18361 Query 14052 GCTTGCTGAAGGTAATATCCGATTCAGGTTTCAGCGCCTTCTCGGCCACCACATCGGCGT 14111 | | || || || | || ||||| || |||| || ||||| || | || Sbjct 18362 CGGCGGTAAAAGTGATGTTAGACTCAGGCTTAAGCGTATTTTCGGCAACAGGTGCAGCCG 18421 Query 14112 TATTGGTAAACACTTCTTCACGGACATATTCCAGGGAGTTACTGGAAATGCGGCCCTGCG 14171 |||||||| || | |||||| | || || | | ||| |||| | | || |||||| Sbjct 18422 AGTTGGTAAATACGTTTTCACGCATGTACTCGATGCTGTTGCTGGTAGTACGACCCTGCA 18481 Query 14172 CCAGCAGATCACGAATGGTCAGACGGCGCAGGCCCGGCAT 14211 |||||||| || | ||||| |||| || |||||||| Sbjct 18482 AAAGCAGATCGCGGACGGTCAAACGGGTAAGACCCGGCAT 18521 Score = 82.4 bits (90), Expect = 2e-11 Identities = 203/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 14892 GGTGTAATCGTCTTTCGCAACGGAAAAGCCAACCGACATACCTTCAACCGTACCGTGCTG 14951 ||||||||| |||| | ||| ||||| ||||||||||| || || || || | Sbjct 19174 GGTGTAATCCCCTTTACCGACGCTGAAGCCGACCGACATACCGGTCACGGTTCCATGTTT 19233 Query 14952 CATTGCCGCTTTCAGGTCGGCGGCGCCGCTGTGCCCTGGGGTAAGTTGACCGCGCACATA 15011 |||||| || | |||| || || | || || || | | || ||||| | Sbjct 19234 CATTGCAGCCAAAATGTCGCTGGACTTACTTAGGCCGGGCGTTAACTCTCCTCGCACGAA 19293 Query 15012 CAGGCCTTTTTCGTCTTCGGCCAGGCTGTCCCATTTACCAACCGGCAGCTCCCACGTCTT 15071 |||||||| |||||||| |||| | |||||||||| || || | || | | || Sbjct 19294 TAGGCCTTTGTCGTCTTCTTTCAGGTCGACCCATTTACCGACTGGGATATCATAGCTGTT 19353 Query 15072 GTGGTTGAAAAACATCGCCACTTTTCGGGTCTGGTTCGCCAGTGCGTTTTTAAACGCCCC 15131 ||||||||||||||||| || || |||| ||||| || |||||| || Sbjct 19354 ATGGTTGAAAAACATCGCTACAGCACGATCGCGGTTTTTCAGTGTATTAGAAAACGCGCC 19413 Query 15132 GGGCAGAATGATGTCTCCGTCGGAATCGGTGTTATTAAAAACAGAGGCATAACCTTCAAA 15191 ||||| |||| || ||| |||| | |||| || || ||||| |||||||| Sbjct 19414 GGGCATGATGACATCCTGAACGGCATCGACAACACTAAATACCGAAGCATATCCTTCAAA 19473 Query 15192 AATTCCCT 15199 | |||| Sbjct 19474 GACGCCCT 19481 >seq17393 Length=1625 Score = 100 bits (110), Expect = 7e-17 Identities = 187/272 (69%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 4283 GGTGCTGTCCGCCGTCGTCCGGCTCACACGAAGCTGCCAGCCGGTCCGGGCAGGCGGAAG 4342 |||||||| || || || | ||| || | ||||||||| | | |||| || | Sbjct 1617 GGTGCTGTTAGCGGTAAGGCGACGCACGCGGACCTGCCAGCCAATATGCGCAGCGGGTAA 1558 Query 4343 GTCAATGCGATGGCTGCGCTCATAGAGGGAGGTGGTTTTACCGTCGAACGCGCTGTTCAG 4402 ||| ||||||||||| | ||||| | |||||||||||||| | ||| | || || Sbjct 1557 GTCGATGCGATGGCTTCTTTCATACTTTGTCGTGGTTTTACCGTCTACCGCCGTATTGAG 1498 Query 4403 CACTGCGACATACCCGCCGCCGTCTGTGGACAGTTCAATTTTGTATTCAACGCGGTAGCC 4462 |||| | ||| | ||||||||||||| || |||| ||||| | ||||| || Sbjct 1497 CACTTCCTGATAGGCACCGCCGTCTGTGGCCAAATCAACAGCGTATTGGATCCGGTACCC 1438 Query 4463 CACCACATCCCCGTTGTCCTTCATGCGCTGCAG-TGAAGGCACACC---GAGA--CGCAC 4516 |||||| || || ||||| || ||||| ||||| | || |||| |||| Sbjct 1437 CACCACGTCGCCATTGTCTTT------TTGCAGTTGAAGCGCCGCCCAGGAGAAGCGCAG 1384 Query 4517 CCGGACCGCAGAGAGCTGCGTATTGCTGATGG 4548 || || || || ||||| |||||| |||||| Sbjct 1383 ACGCACTGCCGAAAGCTGTGTATTGGTGATGG 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124510871205448