Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq88566 102 7e-17 seq119770 96.9 3e-15 seq21876 84.2 2e-11 >seq88566 Length=1870 Score = 102 bits (112), Expect = 7e-17 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 28543 ATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAA 28602 ||||| | ||||||||||||| || ||||| | |||||||||||||| || || Sbjct 467 ATTGTTCAGAAATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGG 408 Query 28603 CGGAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTG 28661 |||||||| || || | | || |||| || || | || || || || ||| | Sbjct 407 TTGAACCTTCCGATACTATTGAACATGTCAAAGCCAAGATTCAA-GATAAGGAAGGAATT 349 Query 28662 CCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATG 28721 || |||||| || | | || ||||| |||||||| ||||||| |||| || Sbjct 348 CCACCAGATCAGCAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTG 289 Query 28722 GCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGG 28781 | ||||||||||||||||| |||||||| |||| | ||||| | | |||||||| Sbjct 288 GGTGATTATAACATTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCTCAGAGGAGGG 229 >seq119770 Length=1537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| || || |||||| |||| || || ||||| ||| || ||| || Sbjct 1095 AAAATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCA 1036 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || |||| || || | || || ||||| || | || ||| Sbjct 1035 TCTGACACCATTGAAAATGTCAAAGCTAAGATTCAG-GATAAAGAAGGTATTCCACCAGA 977 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | ||||| || || || |||||||| |||||| ||| | |||| || Sbjct 976 TCAACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTA 917 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 || |||||||||||||| || || ||| ||||||| | |||| || || || || Sbjct 916 CAATATTCAAAAAGAATCAACACTTCACCTGGTATTGCGTCTACGTGGTGGTATTAT 860 >seq21876 Length=2391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| || || || || || || ||| ||| || || || Sbjct 512 ATGCAAATCTTCGTAAAAACTTTGACTGGCAAGACTATCACCCTGGAAGTTGAGCCGTCT 571 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| || ||| ||||| |||||| | ||| |||||| Sbjct 572 GACACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 631 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||| || ||||| |||||||||||| || || ||||||| ||| Sbjct 632 CAGCGTTTAATCTTCGCCGGCAAGCAATTGGAAGATGGCCGTACCTTGTCCGATTACAAC 691 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || || |||| Sbjct 692 ATTCAGAAGGAATCAACGCTTCATTTGGT 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424683899188434