Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq1819 150 2e-31 seq64268 113 4e-20 >seq1819 Length=65085 Score = 150 bits (166), Expect = 2e-31 Identities = 532/822 (65%), Gaps = 27/822 (3%) Strand=Plus/Plus Query 38615 GAAATCCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAG 38674 |||||||| ||||| ||| ||||| ||||| | || || | || || || || | Sbjct 3552 GAAATCCAGCCTTTACGGAAGGCAATCTCTTCAAGACAGGCCACTTTAAAGCCCTGGCGT 3611 Query 38675 TTCTCAATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCA 38734 |||||||| || || | |||||| |||||| | ||| ||| ||||||||||||| || Sbjct 3612 TTCTCAATGGTATGAATAAATTGAGAAGCTTCGAGCAGGCTGTCGTGTGTTCCTGTATCT 3671 Query 38735 AGCCAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTG 38794 | ||| | ||| || || || | ||| |||| | || | ||| ||||| | Sbjct 3672 AACCAGGCAAAACCGCGACCCAATTGTTCAACTTTCAGGTTACCAGCTTTCAGGTACATC 3731 Query 38795 CGATTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGT 38854 || | ||||| || || || || || ||||| | | || ||| | Sbjct 3732 TCGTTCAGCGTGGTGATTTCAAGCTCACCTCGGTGCGAAGGCTTGATTTGCTTTGCCATT 3791 Query 38855 TGAATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTT 38914 | || ||| | ||| |||||||| | ||| || || || ||| ||| ||| | Sbjct 3792 TCAACAACGTGATGATCGTAGAAATAAAGACCGGTTACCGCCCAATTTGAACGAGGCTCA 3851 Query 38915 TCAGGTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAAT 38974 || || |||||||| |||||||| || || |||| || || || || || Sbjct 3852 GTCGGCTTTTCTTCAATGGAAATAGCGCGATTCTTTTCGTCAAACTCTACGACGCCAAAA 3911 Query 38975 CGTTCAGGATCTTTCACCAAATACCCGAAAATACAAGCTCCGCCCCAAACATCTACCATC 39034 || || ||||| | ||| ||| || || | ||| || | || || | Sbjct 3912 CGCTCTGGATCCATTACCTGATAGCCAAAGACGGTAGCGCCATC---AATATTG-----C 3963 Query 39035 TCACTGGCGTTAATCAGTAGTTTACCA---AAGCTTTGTCCGAAGAATAGGTTGTCACCT 39091 |||| | ||| ||| ||||||| | ||||||| |||||||| | ||| ||||| Sbjct 3964 TCACCG-CGTGC-TCA--AGTTTACGACCGAAGCTTTCACCGAAGAAAATGTTATCACCA 4019 Query 39092 AAAATAAGAGCAACAGAGTCTTCTCCG---ATAAAATCTTTACCTATGATGAAAGCTTCC 39148 | | || ||| || ||| ||| |||||||| | || || || || || | Sbjct 4020 AGGACCAGTGCAC---AGCTTTCACCGGCAATAAAATCCTCGCCGATAATAAAGGCCTGG 4076 Query 39149 GCAAGACC-TCGTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATCCCAAACATAGACCC 39207 || | ||| || |||| || | | || || || ||| || ||||| || || Sbjct 4077 GCTAAACCATCCGGGCTTGGCT-GAATAGCATATTGCAGTGAAATACCAAATTGGGAACC 4135 Query 39208 ATCTCCGAGAAGATACTCAAAGTCTTCCTGATCACCTGGTGTGGTGATGATTAAAATATC 39267 || || | |||| |||| | || | ||| | |||||||| || || | ||| || Sbjct 4136 GTCACCCAAAAGACGAACAAATGCATCATTATCTTCGGGTGTGGTAATAATAAGAATGTC 4195 Query 39268 CTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTGTCATACAC 39327 ||||| ||||||||||||| || || | || || |||||||| ||||| ||||| | Sbjct 4196 TTTAATACCAGCCAACATCAAAACAGAGATCGGATAATAGATCATCGGTTTATCATAAAT 4255 Query 39328 AGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCACTTCCTCC 39387 ||||||||| ||||| |||| ||| || | |||| | || ||||| || || Sbjct 4256 AGGGAGCAACTGCTTCGATACACCGCGGGTAAGGGGATATAAACGCGTTCCTGAGCCGCC 4315 Query 39388 CGCCAAAATAATACCTTTCATAACCCT----CCTTAAATTTT 39425 |||| ||| ||||||||||| | || ||||||| ||| Sbjct 4316 AGCCAGAATGATACCTTTCATGATTCTGTCACCTTAAAATTT 4357 Score = 123 bits (136), Expect = 2e-23 Identities = 212/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 || || || ||||| |||||| | | |||||| || | ||| |||||||| ||||| ||| Sbjct 4717 GCACGGGCGTGATCTTCAACATACAACCAGTCACGAATCTGATCGCCTTTGCCATAGACC 4776 Query 39796 GGAATCTCTTTATTCGTCAAGATACTTGTGATGATTTTTGGGATCAGCTTTTCTGGATGT 39855 || | |||| || || | | | |||||| || ||||| || || || Sbjct 4777 GGCAGAGGTTTACCCGCCAGGGCATTCAGGATGATCAACGGAATCAGTTTCTCAGGGAAA 4836 Query 39856 TGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGCGG 39915 |||||||| ||| |||| || || ||||| || | || ||||| |||||||||| Sbjct 4837 TGATAAGGGCCATAGTTGTTAGAACAGTTCGTCACCAGGGTAGGCAGGCCGTAGGTGCGT 4896 Query 39916 TGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGGGCTTGAAGGG 39975 | ||| ||| |||| | ||||||| || ||||| |||||| || ||||| |||| Sbjct 4897 TTCCATGCTCTCACCAAATGGTCACTGGCGGCCTTGGACGCAGAATAAGGGCTACTAGGG 4956 Query 39976 GCATAAGCTGTCTCTTCGGTAAAGGGAACGCCAGAGTCTGCCATATCGCCGTACACTTCG 40035 | ||| | || |||||||| || | || | | | | ||| || ||||||||| Sbjct 4957 GAATAGGGGGTTTCTTCGGTGAATAGGTCGTCCACGCCGTGTAAATCACCATACACTTCG 5016 Query 40036 TCTGTGGA 40043 || ||||| Sbjct 5017 TCGGTGGA 5024 >seq64268 Length=1011 Score = 113 bits (124), Expect = 4e-20 Identities = 251/374 (67%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 38620 CCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTCTC 38679 ||| || ||| |||| | |||||||| | || || | || || || |||| ||||| Sbjct 931 CCAGCCATTTCGGAAACCGATTTCTTCAAGACAGGCCACTTTAAAGCCCTGACGTTTCTC 872 Query 38680 AATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGCCA 38739 |||||| || | ||| || || || | |||||| ||||||| ||||| || | ||| Sbjct 871 AATAGTGTGAATGAACTGCGACGCCTCAAGCAGACTATCGTGTGTACCTGTATCCAACCA 812 Query 38740 AGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTT-CCTGTCTTCTAGGTAGCTGCGAT 38798 | |||||| || || | | ||| || | || || ||| | || ||||| | || Sbjct 811 GGCAAATCCACGCCCTAATAGTTCGACGTTCAATTTACCTTTGTTG-AGGTACATTTCAT 753 Query 38799 TGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTACTTCTAATGCACGTTGAA 38858 | | ||||| || ||||| ||||| | ||||| |||| | | ||| | || Sbjct 752 TCAGCGTGGTGATTTCGAGTTCACCACGGGGAGAAGGTTTTACCTGTTTTGCCATCTCAA 693 Query 38859 TAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTCAG 38918 ||| | ||| ||||||||||| | || || || || | | || |||||||| | | Sbjct 692 CAACGGCGTTGTCATAGAAATAGAGGCCAGTCACTGCCCAGTTAGACTTAGGATTGGCGG 633 Query 38919 GTTTCTCTTCAATAGAAATAGCTTGACGATTACTCCCAAATTCAACCACACCGAATCGTT 38978 | || || |||| ||| ||||| || || ||||||||||||| || || || | Sbjct 632 GCTTTTCCTCAAGAGAGATAGCCCGATTGTTTTCATCAAATTCAACCACGCCAAAACGCT 573 Query 38979 CAGGATCTTTCACC 38992 | || || ||||| Sbjct 572 CTGGGTCCATCACC 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471808932917520