Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2788 185 1e-41 seq14905 134 2e-26 seq38357 100 3e-16 >seq2788 Length=136445 Score = 185 bits (204), Expect = 1e-41 Identities = 296/421 (70%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 40454 TCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGT 40513 ||||| || || ||||||||| | || || || || || || ||||||||| | ||| Sbjct 19677 TCTCTGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGC 19618 Query 40514 GTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT---GCGATC 40570 ||| | || || | || || || | || | ||||| ||||| || ||| Sbjct 19617 GTACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATC 19561 Query 40571 GTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATG 40630 ||||| || ||||||| || || ||||| || | ||||| || | || || || || Sbjct 19560 GTGAAATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTG 19501 Query 40631 GGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACA 40689 ||| || || || |||||||| | ||||| || ||| || || |||| || || Sbjct 19500 GGTAGCCCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGT-ATCCCGTTCTATAAGCA 19442 Query 40690 TATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACT 40749 | || || || ||||||||||| || ||||| ||||| || || |||||||| || || Sbjct 19441 CTTCCAGACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCT 19382 Query 40750 GTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGG 40809 || || || | ||||| ||||||||||||| ||| ||||| |||| |||||| || Sbjct 19381 GTTCTACCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGG 19322 Query 40810 CGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTA 40869 || |||| |||||||||||||| | || || || || ||| | ||| | ||||||| Sbjct 19321 TGTTGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTA 19262 Query 40870 T 40870 | Sbjct 19261 T 19261 Score = 102 bits (112), Expect = 9e-17 Identities = 205/299 (69%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 42223 GCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCC 42282 ||||||| | || | ||||||| |||| |||| ||||| || |||||||||||||| Sbjct 17797 GCAGAAATATGAAATCTTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCC 17738 Query 42283 GGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCA-AAACTTCCTGAACATGAAA 42341 ||||||||| || | | ||||||||| | | | || || || || ||||||| Sbjct 17737 GGAAGAAGTTGACGTTGCCCGTGACCGTATCGACT-TCCAGGGTCTGCCGGAGCATGAAA 17679 Query 42342 AAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTG 42401 || ||||||| ||||| ||||||| || ||| | || | |||||||| ||| Sbjct 17678 AACACATTTTCCTGAGCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTA 17619 Query 42402 GGCCTAACCTCGCATTTTTGCC----AATTGCATCCGATGTGAGCATGGAAACCTGGATC 42457 | |||||| | || | |||| | | ||| | | |||| | || |||||| | Sbjct 17618 GCCCTAACGTGGCGCTACTGCCGCTGATCTCCATTCCA---GAGC-TTGAGACCTGGGTT 17563 Query 42458 GAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 42516 || || |||||||| || || |||||| || |||||||||||| ||||| Sbjct 17562 GAGACCTGGGCGTTCTCCGAGACTATCCACTCACGCTCGTACACGCATATTATTCGTAA 17504 >seq14905 Length=119551 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 50835 TCAGCCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGA 50894 ||||||||| ||| || ||||| || |||||| | ||||| ||||| |||| || || Sbjct 42258 TCAGCCAACGGTTCGCGTAGAAGGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGA 42317 Query 50895 AACTCTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTC 50954 || ||| |||||| | |||||||||| || || || ||||| || |||||||| || Sbjct 42318 GACGCTCGAAGATGCGATAAAACATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTC 42377 Query 50955 TGGTTATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAG 51014 || || || |||||||||||||| |||| || |||||||| | ||||| ||| | | Sbjct 42378 GGGGTACGCCGTGCGTTTTAACTCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCG 42437 Query 51015 AACCTTTACAGAGAGTCTATAA 51036 || || || |||| || ||| Sbjct 42438 TACTTTCACTCAGAGCCTGTAA 42459 >seq38357 Length=36386 Score = 100 bits (110), Expect = 3e-16 Identities = 210/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 152601 ACAGAAAAGGATGTATTCGATGCGTTCCAGTCATACGAATATGAAGTAAACACCTTACAT 152660 |||||||| || | ||| || || ||||| |||||||| || || || | || Sbjct 27564 ACAGAAAAAGAGTGCTACGACGCCTTTCAGTCGCTGGAATATGAGGTTAATACGCTTCAC 27623 Query 152661 ACTGCAAATGGACAGACGCCTTTTGTCACAATCACTTTCGGTATGGGTACTGGTTGGCGC 152720 || || || || |||||||| ||||| || | || ||| ||||||| |||||| Sbjct 27624 ACCGCCAACGGCCAGACGCCGTTTGTGACCTTTGGCTTTGGTCTGGGTACCTGTTGGCAA 27683 Query 152721 GAACGCATGATCCAGAAAGCGATTCTGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGC 152780 | || |||| || ||| |||||||| |||||||| ||| | || ||||| | Sbjct 27684 GCGCGGCTGATTCAAAAATCGATTCTGCGCAACCGTATCGCCGGATTAGGAAAAAATCGT 27743 Query 152781 ATTACCCCTGTATTCCCAAAACTGGTTATGTTTATGGAAAAAGGGATTAACCTTAATCCG 152840 | || | || || || ||||||||| | || | || || || | ||| || Sbjct 27744 AAAACGGCCGTGTTTCCCAAACTGGTTTTCGCCATTCGCGACGGCATAAATCATAAGGCG 27803 Query 152841 GAAGACAGAAACTATGATATTAAGAAATTGGCCCTGGAATGTGCTTCAAAGCGTATGTAT 152900 | ||| || ||||| || || | | ||||| |||||||| |||||||||||| Sbjct 27804 GCCGACGCCAATTATGACATCAAACAGCTCGCCCTCGAATGTGCCAGCAAGCGTATGTAT 27863 Query 152901 CCGGATATTATTA 152913 || |||||| ||| Sbjct 27864 CCCGATATTCTTA 27876 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 153154 AAGCCCTGATGACTCGTATTGATAGTCTCAGAGGTGTTAAAGCCAGTGTAGCCCCGATCC 153213 |||| ||||||| ||||| | | ||| || || |||||| | || || ||||||| Sbjct 28126 AAGCGTTGATGACCCGTATCGCCCGACTCGACGGGGTAAAAGCCCGCGTCGCGCCGATCC 28185 Query 153214 TTTATACAGAAGGTGCGTTTGGTGTACGGTTGAAACCCGATGATGAAATTCTGGAACTGT 153273 |||||| || ||||| | || || || |||||| |||||||||| || ||| | | Sbjct 28186 TTTATATGGAGGGTGCCTGCGGCGTGCGCTTGAAAGCCGATGATGACATCAGCGAAATCT 28245 Query 153274 TCAAAAATGGGCGTAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAACT 153326 ||||||| ||||| || ||| ||||| || ||||| |||| |||||| Sbjct 28246 TCAAAAACGGGCGGGCCTCCATCTCGCTGGGTTATATCGGCGTGCACGAAACT 28298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/278 (68%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 152186 ATTCCCGACTAAACGCGATCTTCTGGCGGGTATCGTTTCTAAACA-TATGGCGCGTAACC 152244 |||||| || | ||||| || |||||||| || || | ||||| |||| ||||| | | Sbjct 27112 ATTCCC-ACACAGCGCGACCTGCTGGCGGGGATTGTAGCGAAACACTATG-CGCGTCAGC 27169 Query 152245 ATATTCTACCGAAACATATTGTAGAGGCGCATGATTCCGGTGATATTCATTATCACGATC 152304 ||||||| || | | || ||| || || ||| || |||||||||||||||| Sbjct 27170 ATATTCTGCCTCGTGACGTGGTGCTGGCCCACGAGCGCGGCGAAATTCATTATCACGATC 27229 Query 152305 TGGATTACAGCCCGTTCACCCC-ATACACTAACTGCTGTCTTGTTGACCTAAAAGGCATG 152363 | || ||| ||||| ||| || | |||||| || | ||||| ||||||||| Sbjct 27230 TCGACTACTCACCGTTTTTCCCGATGTTC-AACTGCATGCTCATCGACCTCAAAGGCATG 27288 Query 152364 TTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCGAACCGCCTAAATCAATCGGTGTT 152423 || | || || || ||||| ||||| || ||||| |||| || || ||| Sbjct 27289 TTGAATAAAGGTTTTAAAATGGGCAACGCGGAAATCGATACGCCGAAGTCCATCTCCACC 27348 Query 152424 GCTACTGCTCTTATGGCTCAGATCACCGCACAGATTGC 152461 || || || | | ||| ||||| | ||| ||| |||| Sbjct 27349 GCGACCGCCGTCACGGCACAGATTATCGCTCAGGTTGC 27386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557023765273680