Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020083.1 Length=157834 Score E Sequences producing significant alignments: (Bits) Value seq2788 152 5e-32 seq6040 91.5 1e-13 >seq2788 Length=136445 Score = 152 bits (168), Expect = 5e-32 Identities = 280/406 (69%), Gaps = 6/406 (1%) Strand=Plus/Minus Query 106056 TCTGCCGACCCCGATCATGGCTGGCGTCCGTACCCGTACCCGTCAGTTCAGCTCCTGTGT 106115 |||||| || || || ||| | ||||| || |||| || || ||||||||||| || || Sbjct 19675 TCTGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGT 19616 Query 106116 GCTGATCAAAGTCGGCGACACGCTGGACTCTATCAAGGCCGCAGGCTCTGCTATCGTTGA 106175 |||||| | |||||||| |||||||| ||||| || | | || ||||| | Sbjct 19615 ACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCGACCTCCAGCGCCATCGTGAA 19556 Query 106176 CTATGTCAGCAAGCGCGCAGGCATCGGTCTGGACGTGGGGGAGATTCGTGCCCTCGGTGC 106235 || || |||||||||| ||||| | ||| || || ||||| || ||| Sbjct 19555 ATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAG 19496 Query 106236 TCCTATCCGTGGCGGTGAGATGGAGCATACCGGAACTATCCCATTCATCAAGAAGTTC-- 106293 || || || |||||||| |||||||| |||||| ||| ||| | ||| Sbjct 19495 CCCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCA 19436 Query 106294 GTCGGTGACCTGAAGAGCTGCTCTCAGGGTGGGGTTCGCGGCGGCTCTATGACTGCCTAC 106353 | ||| | | || |||||||||||| || || |||||||| || ||| | | Sbjct 19435 GACGGCGG--TTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTC 19378 Query 106354 TATCCGATGTGGCACCTGCA-GTTCCCAGCCATGATTGTTCTGAAGAATAACCGTGGCAC 106412 || ||||||||||||||| | ||| |||| || | |||||||| || |||||||| Sbjct 19377 TACCCGATGTGGCACCTGGAAGTTGAAAGCC-TGCTGGTTCTGAAAAACAACCGTGGTGT 19319 Query 106413 TGAGAACAACCGCGAACGCCGCACTGATTATGGTGTGCAGATCAAC 106458 ||| |||||||| || | || || || || |||||||||||| Sbjct 19318 TGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAAC 19273 >seq6040 Length=129903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19326 ATTTGGTAGTCCCTGTTGGCTTTGAACCAACGACCAAGCGATTATGAGTCGCATGCTCTA 19385 ||||||| | |||| ||| |||||||| ||||||||||||||||||||| ||||||| Sbjct 118355 ATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCTCTA 118296 Query 19386 ACC-ACTGAGCTAAGGG 19401 ||| ||||||||||||| Sbjct 118295 ACCAACTGAGCTAAGGG 118279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504063175019040