Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq2788 205 8e-48 >seq2788 Length=136445 Score = 205 bits (226), Expect = 8e-48 Identities = 247/330 (75%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 76460 GAACGCCCAAGTCTCTACCCATGTTTCCAGGG-TGGTGTCGGATACGATCGGCAGAAGAA 76518 ||||||||| ||||| ||||| || || || ||| | ||| | | |||||| || Sbjct 17548 GAACGCCCAGGTCTCAACCCAGGTCTCAAGCTCTGGAAT-GGAGATCAGCGGCAGTAGCG 17606 Query 76519 CTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGA 76578 | |||| || | ||||||||| | || ||||| || |||| |||||||||||||| | Sbjct 17607 CCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCGTCTGATACTTCAGGTTGCTCA 17666 Query 76579 TGAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGT 76638 ||| ||||| || || || |||||||| | | ||||||| |||||||||| |||| Sbjct 17667 GGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGAAGTCGATACGGTCACGGGCAACGT 17726 Query 76639 TAACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCG 76698 ||||||||| || ||||||||||| | ||| |||||||| ||||| || ||||| | Sbjct 17727 CAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTTCGATCAGTTTTTCGAAGATTT 17786 Query 76699 CATGTTTCTGCTGGTCGTAGCGAGAAACGTTCGGTGTCTCTCCGAGGAACATCGGCT-GA 76757 ||| ||||||||||||| |||| | ||||| | || |||| ||||||||||| || Sbjct 17787 CATATTTCTGCTGGTCGAAGCGCGCCACGTTAACCGACTGACCGAAGAACATCGGCTCGA 17846 Query 76758 GTCAGGAAGTTGAATTTGTTTTGGTTGAAA 76787 | ||| || | ||||||||| ||||| Sbjct 17847 G-CAGCTGGTCGTTTTTGTTTTG--TGAAA 17873 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 79680 TACAGCATTTTGTTCAACTGGAGTCCGTAGTCCACGTGGCGAGCACGGGTGCTCTCAGTA 79739 |||| || |||||| | ||| | |||||||||| ||| ||| | ||| ||| ||| | Sbjct 19262 TACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACA 19321 Query 79740 CCTCGGTTGTTCTTCAGCACAATCAGACTTTCGAAATCCCAGTGCCACATCGGGTAGAA 79798 || |||||||| ||||| || | ||| ||||| | ||| |||||||||||||||||| Sbjct 19322 CCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAA 19380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454597300111440