Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq2788 168 7e-37 seq38357 96.9 4e-15 >seq2788 Length=136445 Score = 168 bits (186), Expect = 7e-37 Identities = 345/511 (68%), Gaps = 4/511 (1%) Strand=Plus/Plus Query 133739 GGGCTGAACAGTGTGATGTACCCATTTTTACCGAGACGTTCCATCATCAAATCATTGATT 133798 ||||||||||| ||||||| || |||| | ||||| | ||||| | ||||| Sbjct 19220 GGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATC 19279 Query 133799 TGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACCTTTGTTGTTCTTTAAT 133858 |||| ||||| || | ||||||| |||||| | || ||||| |||||| || | Sbjct 19280 TGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGA 19339 Query 133859 ACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAGAGTAGCTGCACCACCA 133918 |||| |||| ||||||| || || |||||||| || || | || || || ||||| || Sbjct 19340 ACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCG 19399 Query 133919 CGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATGTTTCCAGAAAGGAATT 133978 || || ||||| ||||| || ||||| || || ||||| || || || |||| || || Sbjct 19400 CGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATA 19459 Query 133979 ACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTCAGCTCGAATCATACCG 134038 ||| ||||| | |||| || | ||| || || || || || Sbjct 19460 CAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCA 19519 Query 134039 GCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATAATACTGTTACTTGCCG 134096 ||||||||||||||||| || |||| ||| | || || | || | | | || Sbjct 19520 GCGTTGATGCCGATACCTGCGCGCT--GTGAAACGTATTTCACGATGGCGCTGGAGGTCG 19577 Query 134097 CATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGAACTAAACTGACGAG 134156 | || || || | ||| ||||| || || | ||| ||||| || ||||| |||| Sbjct 19578 CGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAG 19637 Query 134157 TAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTGGCGAGTAGATACAG 134216 | || || || | || | |||||| || ||||||| ||||||| | || || || | Sbjct 19638 TCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCG 19697 Query 134217 CATCATAAAAACGAATAATATGAGCCAGACG 134247 ||||||| ||||| | || | ||||||| Sbjct 19698 CATCATAGAAACGCTTGATGTAGTCCAGACG 19728 >seq38357 Length=36386 Score = 96.9 bits (106), Expect = 4e-15 Identities = 209/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 38121 TAATAATATCGGGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCAT 38180 ||| ||||||||||||||| ||||| || ||||| | || || |||||||| |||| Sbjct 27876 TAAGAATATCGGGATACATACGCTTGCTGGCACATTCGAGGGCGAGCTGTTTGATGTCAT 27817 Query 38181 AATTTGGGTCTTCACTATGAAGATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAA 38240 |||| | ||| | | | |||||| || || || | | ||||| ||| |||| Sbjct 27816 AATTGGCGTCGGCCGCCTTATGATTTATGCCGTCGCGAATGGCGAAAACCAGTTTGGGAA 27757 Query 38241 AAATTGGAGTAATTCCATGACGACCTAATCCTCGAATACGATTTTTAAGAATAGCTTGTT 38300 | | | || | | || |||||||| ||||| || ||||| | || || Sbjct 27756 ACACGGCCGTTTTACGATTTTTTCCTAATCCGGCGATACGGTTGCGCAGAATCGATTTTT 27697 Query 38301 GAATTAGTTTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTT 38360 |||| || ||| |||| | || |||| |||||| || ||| || || || || | Sbjct 27696 GAATCAGCCGCGCTTGCCAACAGGTACCCAGACCAAAGCCAAAGGTCACAAACGGCGTCT 27637 Query 38361 GGCCGTTAGAACTGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATA 38420 ||||||| | || ||| |||||||| |||||||| ||||| || ||| | Sbjct 27636 GGCCGTTGGCGGTGTGAAGCGTATTAACCTCATATTCCAGCGACTGAAAGGCGTCGTAGC 27577 Query 38421 CATCTTTTTCTGT 38433 ||||||||||| Sbjct 27576 ACTCTTTTTCTGT 27564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511688298906960