Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020483.1 Length=42084 Score E Sequences producing significant alignments: (Bits) Value seq139035 134 4e-27 seq86164 113 1e-20 seq138949 107 5e-19 >seq139035 Length=9387 Score = 134 bits (148), Expect = 4e-27 Identities = 255/362 (70%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 15501 AATAGAACCATACAGAGCTAACGCTTATGTACAAAAAACAATGTCAGGTTCTTTTCTAGT 15560 |||||| ||||| ||| |||| | | |||| || ||| || ||||||| ||| |||| Sbjct 6185 AATAGAGCCATATGCAGCAAACGTATTTATACAGAAGACATTGACAGGTTCATTTGTAGT 6126 Query 15561 TAAGAATAAATATTTAGAAAAGTTACTAG-AGAAAAAAGGCATGAACACTGACGCAGTGT 15619 ||||||| || |||| |||||| |||||||| || || || ||| | | | Sbjct 6125 ACGAAATAAATTCTTGCAAAAACTACTAGCAGAAAAAAATCAAGA-CAATGATGAAACAT 6067 Query 15620 GGCAATCTATTGTAGCACA-GAGAGGTTCTGTATTACATTTAGATGAACTATCTGATTAT 15678 || || ||| | || | ||| |||||||| ||||||||| || | || Sbjct 6066 GGTCCTCAATTTCAACAAATGAG-GGTTCTGTTCAGCATTTAGATTTTCTTAGCAAGCAT 6008 Query 15679 GAAAAAGATACATTTAAAACATCTATA-GAAATTAATCAGCAATGGATAATAGAACATGC 15737 |||||| |||||||||||| | ||| ||| || |||| |||||||| ||||||||||| Sbjct 6007 GAAAAACTGACATTTAAAACAGC-ATACGAACTTGATCAACAATGGATCATAGAACATGC 5949 Query 15738 GGCAGACAGACAACAATTTATA--TGTCAAGGTCAGTCAGTAAATGTATTTGTACCTGCT 15795 || | | ||| ||||| |||||| ||| ||||||||| | || ||||||| Sbjct 5948 --AAGTGATAGAACTTCTTATATTTGTCAATCTCAATCAGTAAATCTGTTCTTACCTGCC 5891 Query 15796 GATGTAAACATTAAAG--AGTTACATGACATACACATGTTAGCTTGGAAAAGAAAAATTA 15853 |||| ||| || | | |||||| | ||||| ||| | |||||||||| || |||| Sbjct 5890 AATGT--GCATAAACGTTACTTACATAAAATACATATGCTTGCTTGGAAAA-AAGGATTA 5834 Query 15854 AA 15855 || Sbjct 5833 AA 5832 >seq86164 Length=15879 Score = 113 bits (124), Expect = 1e-20 Identities = 554/859 (64%), Gaps = 32/859 (4%) Strand=Plus/Plus Query 16194 CAACAAAAAATGCACTGGCTACCTAGTGAAGTACCA-TTGCATGAAGATGTAAGAGATTG 16252 ||||||||||| || |||||||| |||||||| |||| ||| ||||| | |||||| Sbjct 14165 CAACAAAAAATTCATTGGCTACCGGAAGAAGTACCGCTTGC-TGATGATGTTAAAGATTG 14223 Query 16253 GAATGAAAGACTAAGTGCAGAGGaaaaaaaTTTAATAGGACAAATATTAAAATTTTTTAC 16312 ||| | | ||| ||| || || ||||| || |||||||| |||||||| Sbjct 14224 GAAATATAATTTAACCCCAGGTGAGAAGCATTTATTAACGCAAATATTTCGCTTTTTTAC 14283 Query 16313 GCAAGGTGATGTTGATATAGCACAAGCCTATTTAGATAAATATATTCCACAGT--TTAAA 16370 |||| |||| |||| || | |||| | || || ||||| ||| ||||| Sbjct 14284 ACAAGCTGATATTGAAGTAAATAATTGCTATAT-GAAGCAT-TATTCACGAGTATTTAAA 14341 Query 16371 TCACCTGAAATAAGAATGATGTTATCTGCAATAGCTTCTAGTGAAGCAAACCAT---GCA 16427 | ||||| ||| |||||||||||||| | || || ||| || ||| ||| Sbjct 14342 CCCACTGAAGTAATGATGATGTTATCTGCTTTTTCTAATATGGAAACAGTACATATTGCA 14401 Query 16428 -CATAGTTATTCTTTGTTGAATGATACTATTGGATTACCTGATAAGGAATACAAAGCATT 16486 |||| | | |||| | ||||||| | || | ||||| ||||| || || Sbjct 14402 GCATACTCACA-TTTGCT---TGATACTGTAGGGATGCCTGAAGTAGAATATTCTGCGTT 14457 Query 16487 TCAAGAATACAAAGAGATGTCTGATAAACATGAGTATTTATTTA-CATCTAAAGGTAAAG 16545 || ||||||| || ||| |||||| |||| ||| || | || | ||| | Sbjct 14458 TCTTAAATACAAGGAAATGAAAGATAAATATGATTAT--ATGCAGCAATTTGGGGTT--G 14513 Query 16546 GTCTTGA--AGGAC-TAGCTAGAGAGATAGC-GTGTTTCTCTGCGTTTGGTGAAGGCTTA 16601 | | | |||| |||| | | | || || ||| || ||| ||||| ||| Sbjct 14514 CTACTAACGAGGATATAGCAACTACGCTTGCAGTATTTGGA-GCTTTTACAGAAGGATTA 14572 Query 16602 CAGTTGTTTGCATCATTTGTTATGCTTCTTAACTTCCAAAGATATGGACGTATGAAGGGT 16661 ||| | |||||||| |||| ||| | ||||| || | | | | | ||||| ||| Sbjct 14573 CAGCTATTTGCATCTTTTGCTATTATGCTTAATTTTCCACGTTTTAATAAAATGAAAGGT 14632 Query 16662 ATGTGTCAGATAGTAACTTGGTCTATCAGAGATGAGACACACCATGTTGAAAGCATGATT 16721 ||| | ||||| | ||||||| | | ||||| || | ||| | | || ||| Sbjct 14633 ATGGGGCAGATTATTGCTTGGTCAGTGCGTGATGAAACGCTGCATACTAATTCTATTATT 14692 Query 16722 AAATTGTTTCATCAAATTA--TAAAAGAAAACCCAAATATTTGGACAGAAAAATTTAAAG 16779 | | | ||| | || || | | |||||| || | | ||||||||||| || | | Sbjct 14693 ACACTCTTTAA--AACTTTCGTTAGAGAAAATCCTGAAGTCTGGACAGAAAATTT--ACG 14748 Query 16780 CAA--GTATCTATCAAACAGCTAGAGACATGGTTGACCTTGAAGATAAGTTTATTGATTT 16837 | |||||||| || | || | || || | |||||||| |||||||| | | Sbjct 14749 TAGTCGTATCTATAAAGCTTGTACAACTATTGTACATTTTGAAGATGCGTTTATTGCTCT 14808 Query 16838 AGCATTTTCTATGGGTGGTATCAGAGGATTAAAAGCTGATGAAGTTAAAGAGTATATTAG 16897 || ||| | || || || ||| ||| |||||||| || | | |||||||| Sbjct 14809 TGCTTTTGAAGTAGGAGGGATTGAAGGGCTAACGGCTGATGAGGTAAGATTATATATTAG 14868 Query 16898 ATACATAGCAGATAGAAGACTACTTCAGTTATCTTTAAAACCTAATTATGGTGTCAAAGA 16957 ||| || ||||| ||| | | ||||| || ||||| || |||| || ||| | Sbjct 14869 ATATATCGCAGACAGACGTTTGTTTCAGCTAGGGCTAAAAGATATTTATATGGTAAAAAA 14928 Query 16958 GAACCCATTAGCGTGGTTAGATTGGGTATTAAATGGCGTAGAACATGCTAATTTCTTTGA 17017 ||||| | | ||| | ||| | ||||||| || || ||| | || |||||||| Sbjct 14929 TAACCCTCTGCCATGGCTTGATGAAATGCTAAATGGTGTTGAGCATACAAACTTCTTTGA 14988 Query 17018 GAATAGAGCTACAGAATAT 17036 ||||| || || |||||| Sbjct 14989 AAATAGGGCAACCGAATAT 15007 >seq138949 Length=2422 Score = 107 bits (118), Expect = 5e-19 Identities = 299/452 (66%), Gaps = 14/452 (3%) Strand=Plus/Minus Query 16593 GAAGGCTTACAGTTGTTTGCATCATTTGTTATGCTTCTTAACTTCCAAAGATATGGACGT 16652 ||||| || ||||| ||||||||||||| || | || || || ||| | | |||| Sbjct 1161 GAAGGATTGCAGTTATTTGCATCATTTGCAATTTTGCTCAATTTTCAACGGTTTGGAAAA 1102 Query 16653 ATGAAGGGTATGTGTCAGATAGTAACTTGGTCTATCA-GAGATGAGAC-----ACACCAT 16706 ||||| |||||| | || ||| | ||||||| | || | || || || |||||| Sbjct 1101 ATGAAAGGTATGGGGCAAATAATTGCTTGGTC-AGCACGTGACGAAACCTTGCACACCAA 1043 Query 16707 GTTGAAAGCATGATTAAATTGTTTCATCAAATTATAAAAGAAAACCCAAATATTTGGACA 16766 || || | || || ||||| || |||| ||||| || | ||||||| Sbjct 1042 -TTCAA----TTATCAATTTGTTCAATACGTTTATTAAAGAGAATAATGAAATTTGGAAT 988 Query 16767 GAAAAATTTAAAGCAAGTATC-TATCAAACAGCTAGAGACATGGTTGACCTTGAAGATAA 16825 || | || |||| ||| || ||| || | | || ||||| ||||||||| | Sbjct 987 GACGAGTTCAAAG-AAGAATTATATTCTGCATGTCGCACTATTGTTGAACTTGAAGATGA 929 Query 16826 GTTTATTGATTTAGCATTTTCTATGGGTGGTATCAGAGGATTAAAAGCTGATGAAGTTAA 16885 ||||| | | || ||| | | || | | | ||| || || || ||||| Sbjct 928 ATTTATAAGTCTTGCTTTTGATTTAGGAGATGTTGAAGGGCTATCTGCAGAGGAAGTGCG 869 Query 16886 AGAGTATATTAGATACATAGCAGATAGAAGACTACTTCAGTTATCTTTAAAACCTAATTA 16945 | ||||| | ||||||||| | ||||| || || ||| | | ||| ||| || Sbjct 868 CAATTATATACGTTACATAGCAAACAGAAGGTTAACGCAATTAGGTCTTAAATCTATATA 809 Query 16946 TGGTGTCAAAGAGAACCCATTAGCGTGGTTAGATTGGGTATTAAATGGCGTAGAACATGC 17005 | ||| ||||| ||||| | ||||| | ||| || |||||||||| |||||| | Sbjct 808 TAATGTTAAAGATAACCCTATTCCGTGGCTTGATGAAATACTAAATGGCGTGGAACATAC 749 Query 17006 TAATTTCTTTGAGAATAGAGCTACAGAATATA 17037 ||||||||||| ||||||| ||||| |||| Sbjct 748 AAATTTCTTTGAAAATAGAGTAACAGAGTATA 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134325039531592