Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq48654 93.3 1e-14 >seq48654 Length=89670 Score = 93.3 bits (102), Expect = 1e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 |||||| || || ||| ||||||||| |||| || |||||||| || ||| || Sbjct 37368 CCACTTACGGGTTTGCAGTGCGCCTTCAATATAAACCTGAGAGCCTTTACGCAGGTATTC 37427 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 ||| || || ||||| | || ||| | |||||||| |||||||| || ||||| ||| Sbjct 37428 GCCCGCGACTTCTGCGAGTTTGCCGAACAACACAACGCGGTGCCATTCAGTTTTCTCTTT 37487 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | ||| || ||| |||||| | ||| || || | | | | ||| || || Sbjct 37488 CTGCTCGCCGGTCGCCTTGTCGCGCCAGCTTTCAGAAGTTGCCAGGGTGATATTGGCAAC 37547 Query 26008 GGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGAT 26067 || |||||||||||||| | ||||| || ||||| || | || || || | || Sbjct 37548 AGCACCGCCGTTAGGCATATAGCGGACTTCGGGATCCTGACCCAGATTCCCAACCAGAAT 37607 Query 26068 TACCTTGTT 26076 || ||||| Sbjct 37608 CACTTTGTT 37616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123456614842288