Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq36348 100 3e-16 >seq36348 Length=3502 Score = 100 bits (110), Expect = 3e-16 Identities = 345/522 (66%), Gaps = 26/522 (5%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | || ||||| ||||| |||||||| ||||| || || || || Sbjct 1254 ACACCAATAGGACCCATACCGGGACCACCACCACCATGTGGTATACAAAAAGTTTTGTGC 1313 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | ||| | ||||| || || |||| ||| ||||| || |||||| Sbjct 1314 AAATTCAAATGTGAGACATCGCTGCCGTAATCACCTGGACGACAGAGACCGACTTGTGCA 1373 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCA---TTGT-CATGAACGATCTTACA 138358 || | || || ||||| | || ||||| || ||| |||| |||| || | | | Sbjct 1374 TTCATGTTAGCGCCATCTAAGTAAACCTGTCCGCCATGCTTGTGTATGAGCG--CGCATA 1431 Query 138359 TATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 |||||| | || | |||||||| || || |||||||| |||||||| | ||| Sbjct 1432 TATCTG-CAACAGTCT-CCTCAAATACGCCCATTGTAGATGGATAGGTAATCATCAAACA 1489 Query 138419 TGA-GAGTTCAAATGTATTCATGAT-TGCTTTCTTCTC---TAGATCTTTGATGTCTATG 138473 ||| ||||| | ||||| | ||| ||| || || || | || || ||| Sbjct 1490 TGATAAGTTCCTA-----TCATGTTCCGCTGCCTTATCACGTAAATGTGCCATATCAATG 1544 Query 138474 TTGCCATC-ATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACT--A 138530 ||||||| | | | || | | | | |||||||| || ||||| ||| || | Sbjct 1545 CTGCCATCGCTAAGGAGACGT-ATGGGTTCGACTTTCATGCCAGCCAT--TTGCGCTGAA 1601 Query 138531 GCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCC 138589 || || || || ||||| || || |||||| | ||| ||||| | || | || || Sbjct 1602 GCTGGGTTGGTACCATGCGCCGAAATTGGTATTAAACAAACATTGCGTTGACTTTCGTCA 1661 Query 138590 TGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGC 138649 ||| || |||||| | || || || || || ||||| || |||| || | Sbjct 1662 CGAT-GTTCGTGATATCTGCGTATGGCGCGTAGACCAGCGTACTCGCCTTGTGCGCCGGA 1720 Query 138650 GTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 ||| || || || || || |||| |||| || || ||||| Sbjct 1721 GTTGGGCTGAAAAGAGATCTTATCATAACCGGTTATCTCACA 1762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577992057355920