Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq2788 475 2e-129 seq38357 129 4e-25 >seq2788 Length=136445 Score = 475 bits (526), Expect = 2e-129 Identities = 1046/1569 (67%), Gaps = 103/1569 (7%) Strand=Plus/Minus Query 10460 GGCCTACGTAACTCTACTCTATCTGCATTCATGCCTTCGGAAACATCTTCTCAGGTATCT 10519 ||||| |||||||| || || ||||| | ||||| || ||||| ||||| ||| | || Sbjct 18396 GGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCTGAAACCTCTTCGCAGATTTCA 18337 Query 10520 AACGCAACAAACGGCATCGAACCACCTCGTGGCTACATGTCAGTTAAGCAGTCGAAGGAT 10579 ||||| || ||||| || |||||||| || ||| || || | ||| ||| || || Sbjct 18336 AACGCCACCAACGGTATTGAACCACCGCGCGGCCACGTGAGCATCAAGGCGTCTAAAGAC 18277 Query 10580 GGCATCTTAAAACAAATCGTACCGGGTTATGATAAATACAAAGACCAATACGAGTTACTA 10639 || ||| | || | || || | ||||| | |||||||| |||||| | || Sbjct 18276 GGTATCCTGCGTCAGGTTGTGCCTGAGTATGAGCGTTTGAAAGACCAGTACGAGCTGCTG 18217 Query 10640 TGGAATATCAAAGACAACACTGGTTACTTGGAATTGGTTGCCATCATGCAGAAGTTTGTG 10699 ||| |||| | ||| |||||| || | |||| | | |||||||||||||| Sbjct 18216 TGGGATATGCCTAATAACGACGGTTACCTGCATCTGGTCGGTCTGATGCAGAAGTTTGTC 18157 Query 10700 GATCAGGCTATTTCAGCAAACACTAACTACGACCCAGAAAACTACCCAGAAAGTAAGGTT 10759 |||||||| ||||| | ||||| |||||||||||| || || || ||||| Sbjct 18156 GATCAGGCGATTTCGTCTAACACCAACTACGACCCATCCCGCTTTGCAAGCAGCAAGGTG 18097 Query 10760 CCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTTATAGACTCGGCATCAAGACACTG 10819 || || || || | || |||| || |||| || | | ||| | || || ||| Sbjct 18096 CCGATGAAGCAGCTGCTGAAAGACCTGCTGACCGCCTACAAGTTTGGCGTGAAAACGCTG 18037 Query 10820 TACTACCACAACACACGAGATGGTGCTAGTGATGAACAGAAAGAA---------GACGAT 10870 |||||||| ||||| || || || || |||| ||| |||| || | | Sbjct 18036 TACTACCAGAACACCCGCGACGGCGCAGACGATGTTCAGGAAGACATGAAGGCTGAAGTT 17977 Query 10871 GGTGGCTGCGATGGTGGTGGCTGCAAAATTTAAGGAGTCA---TGA-----------TGA 10916 | | |||||| | || | |||||| |||||| ||| | | ||| Sbjct 17976 GACGACTGCGAAAGCGGCGCCTGCAAGATTTAATTGCTCAAATTCAAAAAACGCCTCTGA 17917 Query 10917 A----------TTATTCAG----------------TA------TTTAACCAAACAAAAAA 10944 | || ||||| || ||| || ||||||||| Sbjct 17916 AAAGAGGCGGTTTTTTCAGAGGAAGTTATGGCATATACCACCTTTTCACAAAACAAAAA- 17858 Query 10945 CGACCAACTGAAGGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGACCA 11004 |||||| ||| ||||||||||||||||| || || |||||||| | || | |||||| Sbjct 17857 CGACCAGCTGCTCGAGCCGATGTTCTTCGGTCAGTCGGTTAACGTGGCGCGCTTCGACCA 17798 Query 11005 ACAGAAACATGATGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCC 11064 |||||| |||| | || || ||||| | | ||||| || || |||||||||||||| Sbjct 17797 GCAGAAATATGAAATCTTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCC 17738 Query 11065 CGAAGAAGTTGATGTGTCACAAGACCGAATCGACTACAGTAAAATGACTGATGCGGAGAA 11124 ||||||||||| || | | ||||| ||||||| | || | || || || Sbjct 17737 GGAAGAAGTTGACGTTGCCCGTGACCGTATCGACTTCCAGGGTCTGCCGGAGCATGAAAA 17678 Query 11125 ACACATCTTCATTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAG 11184 |||||| ||| | || ||||||||||| || || | || |||||||| || |||||||| Sbjct 17677 ACACATTTTCCTGAGCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTAG 17618 Query 11185 CCCGAATATGGCGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAAC 11244 ||| || ||||| | ||||| | | || | ||||| | || || ||||| || || Sbjct 17617 CCCTAACGTGGCGCTACTGCCGCTGATCTCCATTCCAGAGCTTGAGACCTGGGTTGAGAC 17558 Query 11245 GTGGAGCTTCAGCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGT 11304 ||| ||| ||| || |||||||| || || ||||| || || ||||| ||||| || Sbjct 17557 CTGGGCGTTCTCCGAGACTATCCACTCACGCTCGTACACGCATATTATTCGTAATATCGT 17498 Query 11305 CAATGACCCTAGTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGC 11364 ||| || || | ||||| || ||| | || || | | ||||| |||| || Sbjct 17497 CAACGATCCGTCACTGGTGTTTGACGATATCGTCACCAACGAAGAGATCCTCAAGCGTGC 17438 Query 11365 TAAAGATATTGCTCGTTACTACGAC-----GATC-------TCATCT----TGGCATGC- 11407 || || || || ||||||||||| |||| || || | | ||| Sbjct 17437 GAAGGACATCTCTGGTTACTACGACTCGCTGATCGAGATGACCAGCTACTATCACCTGCT 17378 Query 11408 ----AAAG---AGCATGAGCTAAACGGCAAACAC----------ACAATGCGCGACCTAA 11450 ||| |||| || | || |||||| || | ||| ||| || | Sbjct 17377 GGGTGAAGGTACGCATCAGGTCAATGGCAAA-ACGGTTGTGGTGAACCTGCACGAGCTGA 17319 Query 11451 AGAAAAAGTTGTACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACG 11510 |||| || | || ||||| ||||| || |||| | ||||| || |||||||||| Sbjct 17318 AGAAGAAACTCTATCTGTGCCTGATGAGCGTCAATGCGCTGGAAGCCGTGCGTTTCTACG 17259 Query 11511 TTAGTTTCGCTTGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAA 11570 | || ||||| ||||||||||| ||||| ||||||||| | |||||||||||||| |||| Sbjct 17258 TCAGCTTCGCCTGTTCATTTGCCTTCGCAGAACGCGAGCTGATGGAAGGTAATGCAAAAA 17199 Query 11571 TCATCAAGCTTATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACATGCTGA 11630 ||||||||||||| || || || ||||| || |||| | ||| || |||||| ||||| Sbjct 17198 TCATCAAGCTTATCGCCCGCGACGAAGCGCTCCACCTGACCGGGACTCAGCACGCGCTGA 17139 Query 11631 AGATGTGGAACAACGGCACCGATGATATGGAAATGGCTTCTATCGCACATGAGTGTCGCG 11690 | || | | ||| ||||||| ||||||||| ||||| | ||||| || | Sbjct 17138 ACCTGCTGCGCTCCGGTGCCGATGACCCGGAAATGGCCATCATCGCCAAAGAGTG-CGAG 17080 Query 11691 -AAGAGTCAATCGAAATATTCAAGATGGCCGAAGAACAAGAGAAAGACTGGGCAAACTAT 11749 |||||| || | ||| | |||||| ||| |||||||||||||||||| | ||| Sbjct 17079 AAAGAGTGTTATGACCTGTTCGTGCTGGCCGCAGAGCAAGAGAAAGACTGGGCAGAATAT 17020 Query 11750 CTATTCAAAGATGGTGGTATGATCGGACTAAACAAAGATATTCTATGTGAATATGTTGAG 11809 || ||| || || |||||||| || |||||||| ||||| || | || | || Sbjct 17019 CTTTTCCGCGACGGCTCGATGATCGGCCTGAACAAAGACATTCTTTGCCAGTACATCGAA 16960 Query 11810 TACATCACAAGCCACCGAATGAAGTATGTCGGGCT-AC--CTCCG--CTACACCCGGAAG 11864 |||||||| | | ||| ||| || || || || || | ||| | | || || Sbjct 16959 TACATCACCAACATCCGTATGCAGGCCGTGGGTCTGACTGCACCGTTCAAGACTCG---- 16904 Query 11865 CAACTAACCCAATCCCATGGATCAACAACTGGTTGGTTAGTGATAATGTTCAAGTTGCTC 11924 | ||||| ||||||||||||||| ||| |||| ||| || || || ||||| | Sbjct 16903 -CTCAAACCCGATCCCATGGATCAACGCGTGGCTGGTGTCTGACAACGTACAGGTTGCGC 16845 Query 11925 CACAGGAAG 11933 | ||||||| Sbjct 16844 CGCAGGAAG 16836 Score = 334 bits (370), Expect = 5e-87 Identities = 554/790 (70%), Gaps = 26/790 (3%) Strand=Plus/Minus Query 9206 TACATCAAAGAATTCTATGATGCAGCGAGCACATTTGAAATCTCCCTCCCGACACCAATC 9265 |||||||| ||||||||||| | || || | || || || || || ||||| Sbjct 19719 TACATCAAGCGTTTCTATGATGCGGTTTCAACCTTCAAGATTTCTCTGCCTACGCCAATT 19660 Query 9266 ATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCTCATGCGTAAAAATCGAAAGCGGT 9325 ||||| || || || || ||||| ||||| |||||||| |||||| ||||| |||| Sbjct 19659 ATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGC 19600 Query 9326 GATAGCCTAAAATCAATCAATGCAACATCAGGCGCAATCGTGAGTTACGTTTCACAGCGT 9385 || ||||| | || ||||| || || || |||| ||||||| |||||||||||||| Sbjct 19599 GACAGCCTGGACTCCATCAACGCGACCTCCAGCGCCATCGTGAAATACGTTTCACAGCGC 19540 Query 9386 GCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCATTAGGTTCTGAGATTCGTGGTGGT 9445 |||||||| ||||| ||||| || || ||||| || | ||| |||||| || ||| Sbjct 19539 GCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGT 19480 Query 9446 GAAGCGGTACATACTGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGTGAAATGT 9505 ||||| | ||||| || |||||||| ||||| || |||||||| || || || |||| Sbjct 19479 GAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCC 19420 Query 9506 TGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTGGCACCTA 9565 || || ||||| || || ||||| || || || | |||||||| ||||||||||| Sbjct 19419 TGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTG 19360 Query 9566 G-AGTACAAATCACTAATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACCGTGTACG 9624 | ||| ||| | || | || || || |||||||||||| | |||| ||||| || || Sbjct 19359 GAAGTTGAAAGC-CTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCG 19301 Query 9625 TCATATGGACTACGGTGTACAAATTAATGGCCTGATGTATAAGCGTCTGCTGTCTGGTCA 9684 ||| ||||||||||| || || || || ||||||||| |||||||| | || Sbjct 19300 TCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGTCTGGTTAAAGGCGG 19241 Query 9685 GAACATCACTTTATTCTCACCTCATAGTGTACCGGGTCTATACGATGCATACTTCGAAGA 9744 |||||||| | ||| || | || || || || ||||| || | ||||| || Sbjct 19240 CGACATCACTCTGTTCAGCCCGTCTGACGTGCCTGGCCTGTACGACGCGTTCTTCGCCGA 19181 Query 9745 CCAAGATAAGTTCGAGCGACTGTACAC-CAA----AGCGGAATCTGATCCAT---CAATC 9796 || || |||||||||| |||||||| ||| ||| | | | | ||| ||| | Sbjct 19180 TCAGGACGAGTTCGAGCGTCTGTACACTCAATACGAGCAGGA-CGAAAGCATTCGCAAGC 19122 Query 9797 GAAAAAGACACAATCTCTGCTAAGGAAGC-ATTCAGCATACTAATGCAAGAGCGTGCTTC 9855 | || | | | | || ||| ||| | | | ||||| || || || || Sbjct 19121 -AGAAGGTGAAAGCCGTTG-------AGCTGTTCTCCCTGATGATGCAGGAACGCGCGTC 19070 Query 9856 TACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATTAACGGTCCTTTCGATGA 9915 || || || ||||| ||||||||||| || ||||| |||| | | || || ||| Sbjct 19069 AACCGGCCGTATCTATATTCAGCACGTTGACCACTGCAACACCCATAGCCCGTT---TGA 19013 Query 9916 GCGCG---TTGCACCAGTACGCCAATCAAACCTATGTATGGAAATCGCACTACCAACCAA 9972 | || ||||||| || ||||| || ||||| || | |||||||| || |||||||| Sbjct 19012 CCCCGCTATTGCACCGGTTCGCCAGTCCAACCTGTGCCTTGAAATCGCGCTGCCAACCAA 18953 Query 9973 ACCGTTGAAT 9982 ||||| ||| Sbjct 18952 GCCGTTAAAT 18943 >seq38357 Length=36386 Score = 129 bits (142), Expect = 4e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 6172 GGCGTAATTCATTTCCATGATATGGATGAGTCGCCGTTCTACCCGATGTTCAACTGCTGT 6231 |||| |||||||| || ||| | || | || ||||| | |||||||||||||||| Sbjct 27208 GGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTCAACTGCATG 27267 Query 6232 TTGGTCGATCTTAAAGGTATGTTGGCGAATGGGTTTATGATGGGTAACGCAGACATCGAA 6291 | |||| || ||||| |||||| || || |||| ||||| ||||| || ||||| Sbjct 27268 CTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGGAAATCGAT 27327 Query 6292 ACCCCTAAGTCAATCTCAACTGCGTGTGCTATCACTGCACAAATTATCGCTCAGGTTGCG 6351 || || ||||| ||||| || ||| || |||| ||||| ||||||||||||||||| Sbjct 27328 ACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTCAGGTTGCC 27387 Query 6352 TGCCAC 6357 ||||| Sbjct 27388 AGCCAC 27393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342391590361874