Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq104767 165 2e-36 seq81489 96.9 1e-15 >seq104767 Length=4578 Score = 165 bits (182), Expect = 2e-36 Identities = 139/163 (85%), Gaps = 7/163 (4%) Strand=Plus/Minus Query 43636 CCGCAGTAAAC-GCGCATCTCACGCGCATATTAACGAGAGCCTTTCAGTAAGC-GAGCCT 43693 ||||||||| | |||| || || |||||| | | |||||| ||||||| |||| |||||| Sbjct 4577 CCGCAGTAACCCGCGCGTCGCA-GCGCATTTCATCGAGAGTCTTTCAGAAAGCTGAGCCT 4519 Query 43694 GAGAAATGCCGTTATAGGTGGCGACCTCTCTCGGGCGGCTTTTCTGTGAGA-CAGGCTCA 43752 ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4518 GAGAACAGCCGTTATAGGTGGCGACCTCTCTCGGGCGGCTTTTCTGTGCGACCAGGCTCA 4459 Query 43753 C-TTTCTAAAAGGTAAAGACGCTATGAATAATCCGTCAGTTAT 43794 | |||||||||||||| ||||||||| |||| |||| || Sbjct 4458 CTTTTCTAAAAGGTAA--ACGCTATGACATATCCAACAGTAAT 4418 >seq81489 Length=1574 Score = 96.9 bits (106), Expect = 1e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 28227 GTGAAAGGGCATTTAAGCTCAAGGCCGAACCCGTTACTGCACAGGCCGTCAGGGGAGCAG 28286 ||| |||||| ||| || ||||||||| || | |||||||| ||| ||||| |||||| Sbjct 585 GTGTAAGGGCTTTTCAGTTCAAGGCCGCGTCCATCACTGCACATGCCATCAGGTGAGCAG 526 Query 28287 GCGGTGCGCATGCTCTCGTCACGGAACAAGATCGGAGACTCCGTGACTTTCACGTCAGTG 28346 ||| || | ||||| | | | ||||| |||| ||||| ||||| || Sbjct 525 GCGCACCGAAGCGAGTCGTCCTTGTAAATTATCGGCACATCCGAAACTTTAACGTCCGTT 466 Query 28347 GTGAACTCGAAGAGGGTGCGGGCGTCTTCTTCGTACTGCTTGCCCCAGGCCAGCGCCTTG 28406 ||||| || || || || || || | |||| | || || ||||| ||||| | |||| Sbjct 465 GTGAATTCAAACAGCGTTCGTGCTGATGCTTCATGCTCTTTCCCCCATGCCAGGGGCTTG 406 Query 28407 GCGTTAACCTC 28417 ||||||||||| Sbjct 405 GCGTTAACCTC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147314755812224