Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq119770 141 2e-28 seq88566 138 2e-27 seq123102 134 2e-26 >seq119770 Length=1537 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||||| || | ||| | ||||| |||||| |||||| Sbjct 863 ATACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCG 922 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| || | ||| ||||||||||||||||| ||||| | | |||||||| || Sbjct 923 GATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGT 982 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | ||| | |||| ||| || || || | ||| Sbjct 983 GGAATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCC 1042 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| || || || || || ||||| ||||| || || ||||||||||| Sbjct 1043 ACCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq88566 Length=1870 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| | || | ||| | |||||| |||| || || ||| ||||| || Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||| || || | ||||| || ||||||||||| | || ||||| || || Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| |||||||| || |||| ||| | || | |||||||||||||| ||||| Sbjct 350 ATTCCTTCCTTATCTTGAATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAACC 409 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || || || |||||||| || || ||||| || ||||||||||||| Sbjct 410 TCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq123102 Length=1410 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || | ||| | ||||||||||| || || ||||||| Sbjct 809 ATTTGCATACCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTA 868 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | ||| ||||| ||||| || || ||||| || | |||||| Sbjct 869 TAATCGGACAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGA 928 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||| | ||| | |||| ||| ||||| ||| Sbjct 929 TCTGGTGGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAA 988 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 | |||||| || | ||| || ||||| || || Sbjct 989 GGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 1020 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || || |||| || | ||| | || || ||| || Sbjct 581 ATTTGCATACCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTG 640 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||||||| || | ||| || | || || ||||| |||||||| | ||||| Sbjct 641 TAATCGGATAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGG 700 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| ||||| | ||| | || || ||||| ||| Sbjct 701 TCTGGGGGAATGCCTTCCTTATCTTGAATTTTTGCTTTAACGTTCTCGATGGTATCCGAA 760 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| | || |||||||| || || | ||||| |||||||||||||| Sbjct 761 GGTTCAACTTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898090733178720