Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq88566 158 2e-33 seq123102 150 4e-31 seq119770 123 5e-23 seq138766 111 3e-19 >seq88566 Length=1870 Score = 158 bits (174), Expect = 2e-33 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCAGA 192368 || ||||| ||||| ||||||||||| || |||| | |||| || || ||||||||| Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGA-ATGTTATAATCACC 288 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||||| | || |||| ||||| |||||||| ||||| | || ||||| ||||| Sbjct 289 CAAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGG 348 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGAATCTGACGATTCT 192486 |||||||| |||||||| || || ||| |||| ||| |||| ||| || | ||| Sbjct 349 AATTCCTTCCTTATCTTGAATCTTGGCTTTGACAT--GTTCAATAGTATCGGAAGGTTCA 406 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 || || || || ||||||||||| || | ||||||| ||||| ||||||| Sbjct 407 ACCTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq123102 Length=1410 Score = 150 bits (166), Expect = 4e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| |||||||||||||| || |||| || || ||||||||||| Sbjct 815 ATACCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCG 874 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| ||| |||| || || ||||| ||||| || || || | |||||||| ||| Sbjct 875 GACAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGT 934 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| ||||| || | ||| || | || Sbjct 935 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 994 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATG 192517 || || | ||| |||||||| || || |||| Sbjct 995 ACCTCCAAAGTGATGGTTTTTCCCGTCAATG 1025 >seq119770 Length=1537 Score = 123 bits (136), Expect = 5e-23 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | ||||| ||||| | || | || | ||||| |||| Sbjct 855 GTTCAATAATACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATAT 914 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || |||| || ||| |||| || |||||||| || || || || | | |||| Sbjct 915 TGTAGTCGGATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTT 974 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| ||||| || ||||||||||| || || ||| ||| ||||| || | || | Sbjct 975 GATCTGGTGGAATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAG 1034 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || || |||| || ||||| || ||||||| |||||| | || || ||||||| Sbjct 1035 ATGGCTCCACCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTT 1094 Query 192539 T 192539 | Sbjct 1095 T 1095 >seq138766 Length=1258 Score = 111 bits (122), Expect = 3e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| |||||| ||||| ||||| || | ||||| | |||| || | || |||||| Sbjct 836 GTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCA 777 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 192459 |||||||| | |||||| ||||| ||||| || || |||||||| |||||||| || Sbjct 776 GCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTTGGCCTTG 717 Query 192460 ACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 ||||| | | || || | || || || || || || ||||| || |||| |||| Sbjct 716 ACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTT 657 Query 192520 TTAATAAATATCTGCATTT 192538 || | || || ||||||| Sbjct 656 TTTACGAAGATTTGCATTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982726122422100