Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq88566 167 4e-36 seq123102 147 4e-30 seq119770 123 5e-23 seq138766 98.7 2e-15 >seq88566 Length=1870 Score = 167 bits (184), Expect = 4e-36 Identities = 189/250 (76%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| || || ||||| || || ||||||||||| || |||| || || Sbjct 211 CTTCTTACGTTTCTTAGCCCCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTT 270 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||| |||||||| |||| |||| |||| |||| ||||| |||||||||||||| Sbjct 271 TTGAATGTTATAATCACCCAAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAA 330 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT-- 172001 | || || || ||||| |||||||| |||||||| || || ||| |||| ||| Sbjct 331 ACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAATCTTGGCTTTGACAT--GTTCA 388 Query 172002 ATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAAT 172061 |||||||| || | ||| || || || || ||||||||||| || | ||||||| |||| Sbjct 389 ATAGTATCGGAAGGTTCAACCTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAAT 448 Query 172062 ATCTGCATTT 172071 || ||||||| Sbjct 449 ATTTGCATTT 458 >seq123102 Length=1410 Score = 147 bits (162), Expect = 4e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| |||||||||||||| || |||| || || |||||||||||| Sbjct 815 ATACCTCCACGAAGGCGTAATACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCG 874 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || || || ||||| ||||| ||||| || | ||||| || ||| Sbjct 875 GACAATGTGCGTCCATCCTCTAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGT 934 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| |||||| ||| ||||| || ||||| || | || Sbjct 935 GGGATTCCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 994 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATG 172050 || || | ||| |||||||| || || |||| Sbjct 995 ACCTCCAAAGTGATGGTTTTTCCCGTCAATG 1025 >seq119770 Length=1537 Score = 123 bits (136), Expect = 5e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||| | || || ||||| | || | || | ||||| |||||| || Sbjct 860 ATAATACCACCACGTAGACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAG 919 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || ||| | || || |||||||| || || ||||| | | ||||| || Sbjct 920 TCGGATAGAGTACGTCCATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCT 979 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||||||||| || || ||| ||| ||||| || || || || | Sbjct 980 GGTGGAATACCTTCTTTATCCTGAATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGC 1039 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||| || ||||| || ||||||| |||||| | ||| || |||||||| Sbjct 1040 TCCACCTCTAAGGTGATGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 >seq138766 Length=1258 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| ||||| ||||| || | | || | | || || | || |||||| Sbjct 836 GTAGACTCTTTCTGTATATTGTAATCGGAAAGTGTTCTTCCATCCTCAAGCTGCTTACCA 777 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||| || | |||||| || || ||||| || || |||||||| |||||||| || Sbjct 776 GCAAAGATCAGTCTCTGCTGATCTGGTGGAATCCCCTCTTTATCCTGTATTTTGGCCTTG 717 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| | | | || || | || || || || || || ||||| || |||| |||| Sbjct 716 ACATTCTCAACATTTTCGGATGGCTCCACCTCCAGTGTTATTGTTTTTCCCGTTAGTGTT 657 Query 172053 TTAATGAATATCTGCATTT 172071 || | ||| || ||||||| Sbjct 656 TTTACGAAGATTTGCATTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903562805746800