Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq136964 149 2e-30 seq4845 118 3e-21 seq91486 111 5e-19 seq60841 111 5e-19 seq103337 87.8 5e-12 >seq136964 Length=1824 Score = 149 bits (164), Expect = 2e-30 Identities = 222/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| ||||||||||||||||| ||||| | | || || | || || ||| || ||||| Sbjct 1276 ACCCACAGCATCAATTTCGTCGATGAACAAAATGCAAGGTGCATGTTTTCTGGCCATTGC 1335 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | |||||| |||| || | |||||| |||| || | |||||||||| | Sbjct 1336 AAACATATCACGTACACGTGATGGACCTACACCAACGAACATCTCCAAAAATTCAGAACC 1395 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||||| |||||| | || || |||||||| ||| |||| |||| | || || || Sbjct 1396 GGATACGGTAATGAAAGGCACGTTCGCTTCGCCAGCTGTTGCCTTCGCTAATAGCGTTTT 1455 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || |||||||| || || | | || ||||||| ||| || || | | Sbjct 1456 TCCAGTACCAGGTGGCCCAGTCAACATCGCGCCTTTTGGTATTTTAGCACCTAAATCAAT 1515 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 || | || ||| | |||||||| | |||| |||| || ||| ||| || || || Sbjct 1516 GTACTGCTGAGGATTTTTTAAAAAATTCACAAATTCCATAATTTCGATTTTGGCTTCCTC 1575 Query 289329 ACATCCTGCTACATC 289343 ||| ||||| ||||| Sbjct 1576 ACAGCCTGCAACATC 1590 >seq4845 Length=5268 Score = 118 bits (130), Expect = 3e-21 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| ||||| || |||||| || ||||||||||| ||| Sbjct 2463 TCCATAGCCTTTATGAGACGACGTTGAATGTAGCCAGTTTCAGCAGTTTTTACAGCAGTA 2522 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| || || | | ||| ||| | || Sbjct 2523 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAATAGAATTCTGAAGGTGTCAAGCCG 2582 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || ||||||||||| | ||| || || ||||||| || | Sbjct 2583 GCAAGGTATGAATTTTCTACGAAACCACGTGACTCAGGACCGTAATCGTC---TTTAATG 2639 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || | || | |||| || || ||||| || || ||||||||||| Sbjct 2640 AAATGTGGCAAAGTACGTTTGCGAAAGCCATAAGGTATACGTTTACCCTCAACGTTCTGT 2699 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || ||||| Sbjct 2700 TGGCCCACACAAGCAATAACCTGTGAGATATT 2731 >seq91486 Length=3079 Score = 111 bits (122), Expect = 5e-19 Identities = 115/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||||| | ||| | ||||||||||||||||||||| | ||| |||||||| ||| Sbjct 1206 TAGCACCGTATGAAATAAGACAATCACGTTCCATTTCACCTAAACGTAGACCACCTTCA- 1264 Query 233331 TTGAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATA 233388 ||| | |||||| | ||||||||||| ||||| ||||||| | ||||| Sbjct 1265 -CGACTGCGACCCTGTGTCGGTTGACGAGTTAGAACAGCCTTTGGACCGCGTGCACGCGC 1323 Query 233389 ATTAATTTTATCTTTAACCATATGCTTCA 233417 || |||||||||| ||||||||||||| Sbjct 1324 ATGCATTTTATCTTGTACCATATGCTTCA 1352 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||||| |||||| | ||||||||| ||||||||||| ||||| |||||||| || ||| Sbjct 1208 GCACCGTATGAAATAAGACAATCACGTTCCATTTCACCTAAACGTAGACCACCTTCACGA 1267 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | ||||| | || |||||||| ||| | || | |||||| | || ||| Sbjct 1268 CTGCGACCCTGTGTCGGTTGACGAGTTAGAACAGCCTTTGGACCGCGTGCACGCGCATGC 1327 Query 251605 TGCTTATCATTTACCATATGCTT 251627 ||||| | |||||||||||| Sbjct 1328 ATTTTATCTTGTACCATATGCTT 1350 >seq60841 Length=2588 Score = 111 bits (122), Expect = 5e-19 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 233260 TAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAG 233319 ||||||| || |||||| |||| ||| ||||||||||||||| ||||||| ||| || Sbjct 762 TAAAAATTGTGCAGCACCATGAGATATCTGACAATCACGTTCCATCTCACCAAAACGTAG 821 Query 233320 ACCACCATCATTTGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCT 233378 |||||| ||| | |||||||| | | |||||| | | ||| | || | |||||| Sbjct 822 ACCACCGTCACGGGCCCTACCCTCCATAGGTTGACGCACTAAAATCTGTAC-TGGACCGC 880 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAG 233418 ||||||| ||| |||||| || | ||||||||||| || Sbjct 881 GAGCACGTGAATGAATTTTGTCATCCACCATATGCTTGAG 920 >seq103337 Length=3927 Score = 87.8 bits (96), Expect = 5e-12 Identities = 116/161 (72%), Gaps = 9/161 (6%) Strand=Plus/Minus Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687 || || | |||||||||||| ||||| || || |||||||||||||| || | || Sbjct 2793 TGTGGTACATGTAAATTCATTTCATCGCCATCGAAATCAGCATTATAGGGAGTGGTACAT 2734 Query 303688 GCAACGTTCATCCGGAAAGTATCACCCTGCATCA---TAACACGGGCTTTATGACACATC 303744 | || |||||| ||||| ||| | | ||| || | ||||| ||| | |||| Sbjct 2733 GAAAGGTTCATACGGAATGTAGACCACGGCAACACTTTGACACG------ATGTCCCATC 2680 Query 303745 ATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCAC 303785 || |||||| |||| | |||||||| ||||| |||| ||| Sbjct 2679 ATTGACATTTTGTGCAATGTTGGCTGCCGATTAAAAATCAC 2639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469195517390502