Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021317.1 Length=21248 Score E Sequences producing significant alignments: (Bits) Value seq139038 131 2e-26 >seq139038 Length=11747 Score = 131 bits (144), Expect = 2e-26 Identities = 633/991 (64%), Gaps = 38/991 (4%) Strand=Plus/Plus Query 144 TAACGTGGTATGCACTAACTACGAGGTTATCG---AATGGCTTATTGACTACTACGGCAA 200 ||||||||| || ||||||||| ||||| ||||| | | | ||| || Sbjct 9779 TAACGTGGTGTGTTGTAACTACGA---TATCGCAGAATGGTTGGTGCAATACCTTGGT-- 9833 Query 201 AGACGACTGGCCTTTTACCGTTATAGTTGCCGATGAAAGCACGAAGCTTAAATCGTTCCG 260 ||||| ||||| ||||||||| | |||||||| ||| || |||||||| |||||||| Sbjct 9834 -GACGATTGGCCCTTTACCGTTGTCGTTGCCGACGAATCGACAAAGCTTAAGTCGTTCCG 9892 Query 261 CAGCCGTTCGGGCGGGAGCAAACGGGCAAGGGCGCTTAGCAAGGTTGCGTTCGGTAAGGT 320 | ||| |||||| ||||| || | || ||| |||| | || | |||| Sbjct 9893 AACGCGT---GGCGGGTCTAAACGCGCCCGTGCTCTTGGCAAAATCGC---CCATAAGAA 9946 Query 321 TAA--GCGTT----TC----ATTA----ACCTTACCGGG-ACACCATCGCCAAACGGCTT 365 || |||| || ||| | |||| |||| || || | ||||||| | Sbjct 9947 AAAAGGCGTCAAAGTCCGGTATTGGTGGAACTTAACGGGTACGCCCGCTACAAACGGGCT 10006 Query 366 AAAAGATTTGTGGGGTCAGAACTGGTTTATCGACGCAGGTGAGCGCCTTGGTTCTTCGTA 425 || ||| | |||||||||||||||||||| || || || | ||| || || | || | Sbjct 10007 CAAGGATCTTTGGGGTCAGAACTGGTTTATAGATGCTGGCGCGCGTCTGGGCACATCTTT 10066 Query 426 CACCGCATTCACCGACCGCTGGTTTAATTCAGTACAGAAAGGAAAGTCGGCGATGGCACG 485 |||||| |||| ||||| | || | || || |||| | | || | | | Sbjct 10067 CACCGCGTTCAAAGACCGGTATTTCACCTCGAAGCAAAAAGCCGA--CAGCAAATACGCC 10124 Query 486 GGAGTAC-CACGCCCGCCCCG-GCGCGGATAACGAGATTCACCAGAAGATGAAGGATATC 543 | || | || ||| ||| | | || | || || | || || ||| Sbjct 10125 GTAGACCTCATACCCATGCCGAGATCAGAACAGCGCATACATCGTGCATTGGCCGACATC 10184 Query 544 AGCCTGACCATTGATGCTGCCGAGTGGTTCGGTTGTGAAGCGCCGGTTATCGTACCGGTT 603 ||||| | || || | | | ||||||||||||| | || || | || ||| | Sbjct 10185 TCGCTGACGGTAGACGCGTCTAAATACTTCGGTTGTGAAGAGGCGATTGTAGTTCCGCGT 10244 Query 604 GAGATTGACCTGCCTAAGAAAGCACGCCAGGCTTACATCGATATGGAGGAGAAGTTATTC 663 | | ||||||| ||||| | | | || |||||||| | || | | Sbjct 10245 CCGGTCTACCTGCCCCGTAAAGCGCAAAAAGTCTATGACGATATGGTGAAGCTGCTGAAG 10304 Query 664 GCGGAGCTAGA-AAGCGGAGAAGTCGAAGCGGCTAATGCCGCTGCTAAAACGTCGAAATG 722 || || || || || ||| ||||||| || | |||||| || || || ||| | ||||| Sbjct 10305 GCCGATCTCGATGAGGGGA-AAGTCGACGCCGTTAATGCGGCGGCCAAGACGGCTAAATG 10363 Query 723 CCTCCAGATTGCCTCCGGTGCTGTATACGTATCAGGGCCAGATGGCGAAGCAACCAAAGA 782 | | ||||| || |||||||| || || || | | | || || || | || || Sbjct 10364 CTTGCAGATAGCTTCCGGTGCCGTTTATGTGACCGACGCCGACGGTGAGCCGACAGGTGA 10423 Query 783 CTGGGAGAAAGTGCACGACACGAAACTGGACGCACTGGAGTCAATTGTGGAGGAGTTGCA 842 ||||||| | || || ||| |||||||| || ||||| ||| || ||| | | Sbjct 10424 CTGGGAGCTTATTCATAACGAGAAGCTGGACGCGCTCGAGTCTATTTATGAAGAGCTCAA 10483 Query 843 GGGCGCGCCGTTGCTGGTGGCGTATCAGTTTAAGCACGAACTTGAGCGCATTCTTAAGCG 902 || ||||| || | ||||| ||| | | | || || | || ||||| || ||| Sbjct 10484 CGGTGCGCCACTGTTAGTGGCCTATTACTATCGCCATGACCGGGAACGCATCCTGAAGAA 10543 Query 903 TTTCCCACAGGCGCAGGCGTTCGCCAAAGGTGCCAAGGGCAATAAGC-AGATGGAAGCGT 961 ||||| |||| ||| | | ||||||| || |||| || | || || || Sbjct 10544 ATTCCCCGAGGCCGTGGCACTGGGCAAAGGT-AAAACCGCAACCCGCAATATCGAGCTGT 10602 Query 962 GGAACCGCGGAGAGATACCTATGCTCCTGATACACCCAGCCTCCGCGGGTCACGGGCTGT 1021 |||||| || |||| |||||||| || ||||| ||| ||| || ||||| || Sbjct 10603 GGAACCAAGGGAAGATCCCTATGCTATTGGCTCACCCGGCCAGCGCCGGGCACGGCCTTA 10662 Query 1022 CGCTACAACACGGCGGGCACCACATGGCCTTTATGAGTCAGGGGTGGAACCTGGAACATT 1081 | ||| ||||||| ||||| ||||| || | ||| | ||||||| ||||| | | Sbjct 10663 ACTTGCAAGACGGCGGACACCATCTGGCCGTTTTTAGTGATACGTGGAACTTGGAATACT 10722 Query 1082 ATCTGCAGGTTATCGAGCGCATAGGTCCGGT 1112 || |||| | |||| || ||||| || || Sbjct 10723 ATTCGCAGATCGTCGAACGAATAGGGCCAGT 10753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 67766075725878