Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq2788 262 4e-65 seq38357 118 1e-21 >seq2788 Length=136445 Score = 262 bits (290), Expect = 4e-65 Identities = 332/455 (73%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 41654 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41713 |||||||| |||||| | || ||||| || || || || ||||| | ||||||| || Sbjct 19671 CCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTG 19612 Query 41714 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCGTGAAG 41770 || || | || || |||| || | || || ||||| || |||||||| Sbjct 19611 ATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCG---ACCTCCAGCGCCATCGTGAAA 19555 Query 41771 TATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGTTCT 41830 || ||||||| || || |||||||| | ||||| || | || || ||| ||||| Sbjct 19554 TACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGC 19495 Query 41831 AAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 41890 || || || ||||||||| | ||||| ||| |||||||||| || || | ||| Sbjct 19494 CCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 19435 Query 41891 ACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTAT 41950 || |||||||||||||| || || || || || || || |||||||| || ||| || Sbjct 19434 ACGGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 19375 Query 41951 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAA 42010 ||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 19374 CCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAA 19315 Query 42011 AACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAACGT 42070 |||||| | |||||| |||| || ||||| ||| | ||| | |||||||| | ||| Sbjct 19314 GGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATCAGCGT 19255 Query 42071 TTGATGAATAACGATTACATCACTCTGTTCAGCCC 42105 || | || || ||||||||||||||||||| Sbjct 19254 CTGGTTAAAGGCGGCGACATCACTCTGTTCAGCCC 19220 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486 || ||||| |||| ||||| || ||||| ||||||||||| ||||||||||| || | Sbjct 17781 TTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGGCGTCCGGAAGAAGTTGACGTT 17722 Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCT 43546 | ||||||||| | | | ||||||| ||||||||| ||||||| Sbjct 17721 GCCCGTGACCGTATCGACTTCCAGGGTCTGCCGGAGCATGAAAAACACATTTTCCTGAGC 17662 Query 43547 AACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAAC 43597 |||||| | ||||| || || ||||| | |||||||| || |||||||| Sbjct 17661 AACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGCCGTAGCCCTAAC 17611 >seq38357 Length=36386 Score = 118 bits (130), Expect = 1e-21 Identities = 212/307 (69%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 152271 AACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGGG 152329 || || ||||| || || || |||| | |||||| ||||||||||| |||||||||| Sbjct 27082 AATGAAAACGCCAATAAGGACAGCAAAGTCATTCCC-ACACAGCGCGACCTGCTGGCGGG 27140 Query 152330 TATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGCA 152389 || |||||||| || | || ||| | ||||| || || | | || || || Sbjct 27141 GATTGTAGCGAAACACTATGCGCGTCAGCATATTCTGCCTCGTGACGTGGTGCTGGCCCA 27200 Query 152390 TGATTCCGGTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAA 152449 || ||| || || || ||||||||||| ||||| ||||| ||| || Sbjct 27201 CGAGCGCGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTCAA 27260 Query 152450 CTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGGA 152509 |||| || | ||||| ||||| ||| || | || |||||||||||||| |||||||| Sbjct 27261 CTGCATGCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGGA 27320 Query 152510 CATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACA 152569 || || |||| || || ||| || ||||| ||| ||| ||||| | ||| || Sbjct 27321 AATCGATACGCCGAAGTCCATCTCCACCGCGACCGCCGTCACGGCACAGATTATCGCTCA 27380 Query 152570 GATTGCC 152576 | ||||| Sbjct 27381 GGTTGCC 27387 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 153274 AAGCCCTGATGACTCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTTGCGCCGATCC 153333 |||| ||||||| ||||||| | || ||| || |||||| | || |||||||||| Sbjct 28126 AAGCGTTGATGACCCGTATCGCCCGACTCGACGGGGTAAAAGCCCGCGTCGCGCCGATCC 28185 Query 153334 TGTACACAGAAGGTGCTTTTGGTGTCCGACTGAAACCGGATGATGAAATTCTGGAACTGT 153393 | || | || ||||| | || || || ||||| | |||||||| || ||| | | Sbjct 28186 TTTATATGGAGGGTGCCTGCGGCGTGCGCTTGAAAGCCGATGATGACATCAGCGAAATCT 28245 Query 153394 TCAAAAATGGGCGTAGCTCTATCAGCCTTGGTTATATCGGACTACATGAAAC 153445 ||||||| ||||| ||| ||| || ||||||||||| | || ||||| Sbjct 28246 TCAAAAACGGGCGGGCCTCCATCTCGCTGGGTTATATCGGCGTGCACGAAAC 28297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562818476095920