Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021775.1 Length=42215 Score E Sequences producing significant alignments: (Bits) Value seq139038 336 6e-88 >seq139038 Length=11747 Score = 336 bits (372), Expect = 6e-88 Identities = 812/1211 (67%), Gaps = 51/1211 (4%) Strand=Plus/Minus Query 530 ACTACCTGGTCGAGTGTATCGGCAGCCTGTATCTGGTACACGAACACCGGGCGAGGATGG 589 || || | |||||| ||| |||||||||||||| | |||| || || || || |||||| Sbjct 10831 ACGACTTCGTCGAGCGTACCGGCAGCCTGTATCAAGAACACAAAAACTGGCCGTGGATGG 10772 Query 590 CCCGCCTGATGCTGACGTACCGGGCCGATACGTTCAATAACCTGCGCGTAGTGCTCGTAA 649 ||||||||||| || || || || || || ||||| | | ||||| |||| || | Sbjct 10771 CCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCCAAG 10712 Query 650 TTCCACGTCATCGAATAGAAT--GCCAGGTGGCAACCGCCGTCCTGAAGGTTGAGGCCGT 707 |||||||| ||| | || || ||||| ||| |||||||| || | ||| ||||||| Sbjct 10711 TTCCACGT-ATC-ACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCCGT 10654 Query 708 GACCGGCTGACGCCGGATGGACAAGCAACATAGGAATCTCGCCGCGGTTCCAGGCGTCAA 767 | ||||| ||||| || | | | |||||| |||| || ||||||| || | Sbjct 10653 GCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTCGA 10594 Query 768 TCTGGTCGTTGCCTCTCTTACCCTTCGCCAGTGCTACGGCTTCCGGGAACTTCTTCAGGA 827 | | | | | | | ||||| || ||||||| ||||| || ||||| |||||||||| Sbjct 10593 TATTGCGGGTTGCGGTTTTACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCAGGA 10534 Query 828 TGCGGGCGCGGTCATGCTGGAACTGGTAGGCCACCAGTAGCGGCGCGCCGTTCAGCTCGT 887 |||| | |||||||| | | | |||||||| | || ||||| ||||| ||||| | Sbjct 10533 TGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCTCTT 10474 Query 888 CGTATATCGAGTCCAGCGCTTCCAGCTTCGCGTTGTGGATAGCCTCCCACTCTTTGGTAG 947 | || || || || ||||| ||||||||| |||| || ||| |||||| || || | Sbjct 10473 CATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTGTCG 10414 Query 948 CCTCTCCGTCGTCGCCAGTCGTATACACGGCACCGCTGGCTATCTGTAGGCATTTCTGGG 1007 ||| |||||| || | ||| ||| ||||||||| |||||||| | |||||| | Sbjct 10413 GCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTAGCCG 10354 Query 1008 TGCGCGCTGCCGCGTTCGCCGCTTCCACCTCTCCGGCTTCGAGCTGGGCGAAGAGTTCCT 1067 | || ||||| || | || || || | || | ||||| | ||| || || Sbjct 10353 TCTTGGCCGCCGCATTAACGGCGTCGACTTTCCCCTCATCGAGATCGGCCTTCAGCAGCT 10294 Query 1068 TTTCCATCTGGTCATAGACTTTGCGGGCCTTAGACGGCAGCGGGAC--GACGACCGGAAC 1125 | |||| | |||||||||||| | || ||| ||||| ||| |||| |||||| Sbjct 10293 TCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACG--CGGAAC 10236 Query 1126 CATCACAGGCTTGTCGCAACCGAAGTATTCGGCGGCGTCCACAGTAAGGCTGATATCCG- 1184 | | | || || ||||||||||||| | ||||| || || || ||| || | Sbjct 10235 TACAATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAGCGAGATGTCGGC 10176 Query 1185 CAATCTTCTGGTGAAT-CTCAGTGTCTGCGCCACTACGCGGCTT--GAATGA--TTTAGC 1239 |||| | | || || | | || |||| | |||| | | |||| | || | Sbjct 10175 CAATGCAC-GATGTATGCGCTGT-TCTG------ATCTCGGCATGGGTATGAGGTCTA-C 10125 Query 1240 TGCATGGTGGC---CGCCCTCCTGGATAGAAACGAACCAGCGGTCAGTAAACGCCTGGTA 1296 || | | || || | | || | || ||| | ||||| | ||||| | | Sbjct 10124 GGCGTATTTGCTGTCGGCTTTTTGCTTCGAGGTGAAATACCGGTCTTTGAACGCGGTGAA 10065 Query 1297 ACTGCTGCCGAGGCGTTGGCCCGCATCCAGGAACCAGCACTGGCCCCACAGGTCTTTCAG 1356 | |||| || || ||| ||||| | |||||| ||| ||||| || || || || Sbjct 10064 AGATGTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAAGATCCTTGAG 10005 Query 1357 GCCATTAGGCGCTGGCGTACCGGTCAGATT-----AA----------TGAAGCGCTTAAT 1401 || || | || |||||||| || | || || ||| || ||| | Sbjct 10004 CCCGTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTGACGC-CTT--T 9948 Query 1402 CTTCTTGTGCGCCACCTTGCCGAGCGCCCGTGCGCGTTTACTACCGCCACGACTACGGAA 1461 ||||| || || | ||||| || || || ||||||||| |||||||| | ||||| Sbjct 9947 TTTCTTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTAGACCCGCCACGCGTTCGGAA 9888 Query 1462 CGACTTCAGCTTGGTGGATTCATCGGCAACAATGACCGTGAACGGCCAGCGGTCACCCCA 1521 |||||| ||||| || ||||| |||||||| | || || || ||||| |||||| Sbjct 9887 CGACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATCGTCACCAAG 9828 Query 1522 GAATTCGACGAGCCACTCCAGGATGTCGTAGTTGCAGCACACCACGTTTGCGTCATCATT 1581 | ||| || | ||| || ||| |||||||| || ||||||||||| | | | | Sbjct 9827 GTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTATCCTTACCGGC 9768 Query 1582 GAGCATCACGTCTTCGCGATACTGGCGGCTG--CCGGTGCCGTCGACGACGCGCAGCGCG 1639 ||| || | || ||||| ||| ||| ||||||||||||||||| |||| ||| Sbjct 9767 GAG---TACTTGTTGCCGATA--GGCTACTGGCCCGGTGCCGTCGACGACTTGCAGTGCG 9713 Query 1640 GGGAATTGCCATTTAGTTTGTTCTGCCGGCCAGGTGCCGGAGGCGACACGTAAAGGTGCT 1699 || || |||||| ||| ||| | ||||| || |||| || || || | || || Sbjct 9712 GGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGCGGCGCG 9653 Query 1700 AAAACAAGAAC 1710 | ||||| || Sbjct 9652 AGCACAAGGAC 9642 Score = 223 bits (246), Expect = 9e-54 Identities = 454/664 (68%), Gaps = 8/664 (1%) Strand=Plus/Minus Query 5070 TCCGGGTCGTCATCGTAATAACCACGGGCTAAGTTCTGCGGCTGAAAGCCTTTACCAGCA 5129 || |||||||| | |||||| ||||| || | |||||||| ||||||||| ||||| Sbjct 7750 TCTGGGTCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCC 7691 Query 5130 AAACGTAAAGTTCTGGACGCACCGCCATACTGAATACAACCGCGACGGCGACCATCGGCG 5189 | | || |||| || || ||||| |||| |||||| || || || || |||||| Sbjct 7690 CATCTTAGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCG 7631 Query 5190 GACAGGCCCAGCAGAAGTGGATTGTACTTGGTCGATGCCGTGGA-GCTGGCCCCCAGGCG 5248 ||||| ||| | |||||| ||||| || ||||||||||| || |||| | || ||||| Sbjct 7630 GACAGACCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTG-CGCCGAGGCG 7572 Query 5249 CATTTCTATAATCGTGCGGGCGTCATCAGGCAGGTCATCGTCAGCCAGCAGGT-CATTGA 5307 |||||| || || |||||| || || || || || || | ||||||| || | Sbjct 7571 CATTTCAATGATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAA 7512 Query 5308 GAGTAGACTTCTGTGCATTGAGAATCTCATG-GCCGGGCGCGAGGTTCCGCAGCGTAGGC 5366 || | |||||| ||||| | | || |||||| || || |||| | ||| Sbjct 7511 GA-CCGCCTTCTGGGCATTCGGTACGGTGTGCGCCGGG-GCTAGACCGCGCAATGCCGGC 7454 Query 5367 AGAAAATCAGCACCGGTAAGGCCCGCACCCCATTTAGCGTTTGCTTCCGCCTGGAGTTCA 5426 || ||||| ||||||||||| || | || |||| || | || || || | ||||| Sbjct 7453 AGGAAATCCGCACCGGTAAGACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCT 7394 Query 5427 ATCTTGTGTTGCTTCACCGCTTCGATTGCTGCGTTAGCCAGCGCCGTATCGACGTAGAAA 5486 |||| || | || | || | | || ||| ||| | ||||||||||| || Sbjct 7393 TTCTTATGCTCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAAC 7334 Query 5487 CCCCGGTCATTGATGCGCTGGTCGACCGCCAGGACGGTGTTCTCAAACTCAGTGTTACCC 5546 || |||||||| ||| |||||| | | | | || ||| |||| ||| ||| | Sbjct 7333 CCTCGGTCATTAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTC 7274 Query 5547 CACTGCGGCAACGAATGGTAAACCTCACGCATTGCAGAAATATCTGACTTGGCATAGGCC 5606 || |||| | | | |||||||||| | || ||||| | || ||| | Sbjct 7273 CATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCT 7214 Query 5607 AGGAATTCAGCCCATTCGCCAGGGTGAGTCTCTTTGGTGTAGCGGCGAACTTTGTAGTTC 5666 | || |||||| | ||||| |||| || |||||||| || | ||||| ||| Sbjct 7213 ACAAAGCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTC 7154 Query 5667 TTCGGCGTGGGCTTACAGAAGCGCTGAATGAGCGCCTT-CCCGCGCTTGTCCTTGGCGTT 5725 || |||||||| |||||||||||||| || | |||||| ||||| ||| || |||||| Sbjct 7153 TTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGC-CTTATCTTTGGCGAG 7095 Query 5726 CTCC 5729 |||| Sbjct 7094 CTCC 7091 Score = 152 bits (168), Expect = 1e-32 Identities = 427/641 (67%), Gaps = 32/641 (5%) Strand=Plus/Minus Query 12515 TGATGGACGAGCCTTGTGCGCTGTTCACCAAGCGAGACCCGATTATCGATGGCCTGTACA 12574 ||||| | || || | ||| ||||||| ||| | ||||| || ||||| | | | Sbjct 1254 TGATGAATGAACCGTCTGCCTTGTTCACTAAGAACGTGCCGATCATTGATGGGTTTTTAA 1195 Query 12575 ACTTCAAATCGACGTTCGAGCTGGTTGGTGAGTCTAACATCGGTAAATCATTCTTCCTGC 12634 ||||| |||||||| | || || || || ||||| || ||||| |||||| | | Sbjct 1194 ACTTCCGATCGACGTGGTACGCGGCGGGCGAATCAAACATAGGCAAATCGTTCTTCGTCC 1135 Query 12635 TTGGTCAGATGGCGTGCGC-GTCGGCG--GGCATTCCGTTTGCTGGCGCGAAGGTTATCA 12691 |||| ||||| ||| |||| || ||||| || ||||| || ||||||||||| Sbjct 1134 TTGGGGCTATGGC---CGCTGTCGCCGCTGGCATACCTTTTGCGGGGCAGAAGGTTATCA 1078 Query 12692 AATCGCACAGCTTCTATTTCGATGCCGAGGGCGGC---AGCACGACAATTGACCGTAAGC 12748 |||| || |||||||| |||||||||| || ||| || | || || | | || | Sbjct 1077 AATCTCATTGCTTCTATCTCGATGCCGAAGGTGGCGAGAGTTC-TCACTTAA--GGAAAC 1021 Query 12749 AGGCGCTACAGAAGACTTACGGCGACGACCTGGACTGGCTTCACATCATCGACCTGCAAT 12808 ||||||| |||| | || || ||||| | ||||| ||||| ||||||| | Sbjct 1020 AGGCGCTCCAGATAAAGTATCAAGATGACCTCAATTGGCTGCACATAGTCGACCT---CT 964 Query 12809 CCGAA---GGCTGGGACATTACCAGCAAGGCAGGCCAGCGCGCCATTATCCGTC-ACATC 12864 | | | ||||||||||| | | ||| | ||| ||||| | | ||| | ||||| Sbjct 963 CGGTATTGGGCTGGGACATCTCAACAAAGACCGGCAAGCGC-CGGGTGACCGACTACATC 905 Query 12865 CGCACAACGGCTGGCTCCGACCCGGTCGGCCTGGTGGCGTTTGACTCCCTCAACCAGTC- 12923 ||||| | || | || || || ||| || | || || ||||| || |||||| | Sbjct 904 CGCACGATAGCCCGTGAAGATCCTGTTGGCATGATAGCCTTCGACTCTCTAAACCAGACT 845 Query 12924 --GG--TTGCGCT-GTCAGA---TAAGCCGTTCGACGAGAACTCATCTTCCGATATGGGT 12975 || || |||| || || | ||||||||| ||||| | | |||||||| Sbjct 844 ATGGCTTTACGCTCTTCCGACCTTCGGCCGTTCGATGAGAATAGCGCGGCAGATATGGGG 785 Query 12976 ACTGTCGCATCGGCACTTAAAGCGATTGCCGATGAAACCGGTGCGTGCGCGGGCGTCGTT 13035 || | | || || |||| ||| | | |||||| | | || ||||||||| Sbjct 784 GAAGTGGTACGCGCCCTGAAAGAGATCTCTATCGCAACCGGCGGATCGGCTGGCGTCGTT 725 Query 13036 CACCACCCGGCCAAATCCGAGAAAGGCGCCCGTCGTATTGGTCGCGGTTCCGGTGCGCTG 13095 || |||||||| ||| | | ||||| || || ||||||||||| |||||| Sbjct 724 CATCACCCGGCAAAA---GGGGGTGGCGCGTCACGCTCTGCGCGCGGTTCCGGCGCGCTG 668 Query 13096 CACGGTGCCGTTGACTTCGTCTACTTCATAGAGCAGCCGGA 13136 || ||||| || || | | || || || |||||||| || Sbjct 667 CATGGTGCAGTGGATTCGGCCTTTTTTATCGAGCAGCCTGA 627 Score = 105 bits (116), Expect = 2e-18 Identities = 431/676 (64%), Gaps = 25/676 (4%) Strand=Plus/Minus Query 4023 TCGACGTTAACAAGCGCGTAGGCCAGAAGGTCACGGCAAAGCGCCTGCGTGACGTTCTCC 4082 |||||||||| | || | |||| | || || || | ||||||||||||||| ||| Sbjct 8737 TCGACGTTAAGCATCGACCAAGCCAACATATCGCGACATATCGCCTGCGTGACGTTTTCC 8678 Query 4083 GACAACTTGCCGCCGTAGGTGTACTGTTTTGACCATTGCCGTGTGGTCTGATTCTGACCC 4142 | |||||| || || || | || || ||| ||| || | || ||||| |||| || Sbjct 8677 GCCAACTTACCACCATACGAATATTGCTTTTCCCACTGTCTCGTAGTCTGGTTCTCGCCG 8618 Query 4143 ATGTAGCGGATACGCTCACGGTACCCTGTTCTGTCGTCGTCCTCGTCAATCTGTTTCTCG 4202 | || ||||| | | ||| ||| || |||| || || | ||| Sbjct 8617 AGATATCGGATCCTCGTGCGGG-----GTT-TGGCGTCCGGGTCTTCCGGGTCACGCTCA 8564 Query 4203 ACAGAAATACCGATACCCGGATAACTCAGCACACGCCCGCTCGGCAGCTCTACCTTAAGC 4262 || || ||||||| ||| || |||||||| | || || ||||| ||| | ||||||| Sbjct 8563 ACGGAGATACCGACACCGGGGTAACTCAGGAACCGACCAGACGGCAACTCGATCTTAAGC 8504 Query 4263 CACCACCCCGGCACGCGTTCGCCTTTCTCTTTGGTGAACGTGCGGGTAATTTTAATCGCC 4322 ||||| || | |||| | | | || || ||| |||||| Sbjct 8503 CACCAGCCAG------------CTTTACCACCGACGGTTGTCCGCACAATGCGGATCGCC 8456 Query 4323 CGGTCGTCGTTCTCGCGCACCGCCGCACCAGCCCAGTAAGCCGTACCCGGGTCTTTGATG 4382 | |||| |||| || || | | ||||| |||||||| | || ||||| | Sbjct 8455 CTGTCGCCGTTTTCACGGATGGGTGCACCTGCCCAGTACGATTGTCCGGGGTCAGCCACA 8396 Query 4383 GCGTTCATCGCTGCGGATTCGAGGTCATTCCAGAACTGGCAGGTTGCCGGG-TGGGATTC 4441 || || | | || |||||| ||| |||||||| | | | || ||| | | ||| Sbjct 8395 GCTTTTTTGACGGCTATTTCGAGATCAGACCAGAACTTG-ACGATGTTGGGATTCGCTTC 8337 Query 4442 TCGCCACATGCGCTTAATGCTGTCACAGGTAAGCCACACATTCTTCGGCAGGTCATAAGA 4501 || | | ||||||| || ||||| | ||| || || || || ||||| ||||| Sbjct 8336 GCGGTAAAGACGCTTAAGCGAATCGCAGGTCATCCATACTTTTTTAGGGAGGTCGTAAGA 8277 Query 4502 AGGGCGCTCCGCCTTCTGG----CCGTTAAAGCCTTTCTTGTTCTTCTCCTGGATGCGCG 4557 || | || || || | || || || |||| || ||| ||| ||||| || | Sbjct 8276 TGGCCTGTCGGCTTTGAGTTGACCCTTTTTAGGCTTT-TTCTTCGCCTCTTGGATACGTG 8218 Query 4558 CATACTCATAGCCACGCTTGGCAGCCGCCCAGATGTGGTCTGGGAATGTGCCTTTCATCG 4617 | || ||| | ||||| |||||||||||||| || || ||||| || ||| | Sbjct 8217 CGTATTCAAATCCACGGCGCGCAGCCGCCCAGATATGATCCGGGAAAGTACCTGCTAAAA 8158 Query 4618 TCTCCGCCATCGCGTACAGGTCTAGACCGAGGTTCTTGGCAAAGGTAAGGAACGCCGCGA 4677 ||| | |||||| ||||||| || | | | || ||||| ||| |||||| || | Sbjct 8157 GCTCGGTCATCGCCAACAGGTCGAGGCTTACCGTTTTTGCAAACGTACAGAACGCGGCTA 8098 Query 4678 CGCCACCCCCGTAGCC 4693 | || || || || || Sbjct 8097 CCCCTCCACCATACCC 8082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134743547360604