Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021777.1 Length=43447 Score E Sequences producing significant alignments: (Bits) Value seq139038 197 4e-46 >seq139038 Length=11747 Score = 197 bits (218), Expect = 4e-46 Identities = 617/948 (65%), Gaps = 43/948 (5%) Strand=Plus/Minus Query 30788 CCGGCACGGAACGTATCTAGCGCGGTTTCTTCCCCCGCCAGCCACGCAAGCCCTCGGCCC 30847 ||||||||||| || || ||| | | ||||| || || ||||| || | ||| || ||| Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 30848 TCGACGTTAGAGTAATCGGCGACGACAAACTTATGTCCTTCTTCCGGTATGATGCAGCTT 30907 || ||||||| ||| ||||| || || | ||| |||| | | || || || | Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCATCGCTTCCGCTGCAATAATACAAGAT 7859 Query 30908 CGAACCGTAGATGCCGTTAACTTAGCTACATCGAAACGGCGGTGCGCCCTGCCCTTAAGT 30967 || ||||| |||||||||| ||| || | |||| | | | | ||| | || |||| Sbjct 7858 CGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGAAGT 7799 Query 30968 AA---------CGC---TGAAATGCCTTTATCC--------AG----TTCA---TCATCG 31000 | ||| ||| | | |||| | || ||| || ||| Sbjct 7798 AGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCGTCG 7739 Query 31001 TGATAGTACCCGCGCGCCAGGTTCTGTGGCTGGAAGCCTTTGCCAGAAAACCGTAGCGTA 31060 || || ||||| || || || ||||| || || |||||| |||| | | ||| || Sbjct 7738 TGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGGGTT 7679 Query 31061 CGCTTTGCCCCGCCGTACTGTATGCAACCGCGACGGCGGTCATCCGAAGCGCGACCCAGC 31120 ||||| || || || || || | ||||| || || ||| | || | | ||||| Sbjct 7678 CGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCCTCG 7619 Query 31121 AGCAATGGGCTGTATTTCGTCGATGCGGTGGACGCGGCCCCGAGGCGCATTTCTATAATT 31180 | | ||| ||||||| |||||||| || ||||| || |||||||||||||| || || Sbjct 7618 ATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATGATA 7559 Query 31181 GCGCGGGCGTCGTCGGGTAAATCCTCATCCGTCAGCAGGTCGTTAAGCGTTGACTTCTGT 31240 ||||||| ||||| || | ||| ||| |||||||| | | |||||| Sbjct 7558 ACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTCTGG 7499 Query 31241 GCGTTGTGTATGCGGTGAGCCGGTGCGAGTTCACGCAGAATCGGGAGGAAATCTTTACCA 31300 || || ||| | ||| ||||| || || | |||| ||| |||||||| ||| Sbjct 7498 GCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCACCG 7439 Query 31301 GTAAG---TGAGCCGCCGTATTTGCGTCGGGCTTCTTCCTGTAACTGCGCT-TTGTGCTT 31356 ||||| ||| |||||||||| || || || ||| | | | || |||| Sbjct 7438 GTAAGACCTGA---GCCGTATTTGGCCATAGCCTC-GGCTTTAAGTTCTTTCTTATGCTC 7383 Query 31357 CTCTACGGCTTCAATCGCAGCTTC-CGCCAGCGCTACGTCAACCTTAAACCCACGGTCAT 31415 || || ||| | | ||| || | || ||| | || || | |||||| ||||||| Sbjct 7382 CTGTATGGCCTGTACCGC-GCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCAT 7324 Query 31416 TGATTAACTGGTCCAGCTCCAGAACACGGTCTTCGAACTC---GGAGTTACCCCAACGTG 31472 | || | |||||| ||| | | | |||| ||| | ||| |||||| ||| || Sbjct 7323 TAATGATCTGGTCAAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTT---CCATGTTG 7267 Query 31473 GAAGCTTATGGAAGACTTCACGCATCGCGGTGATGTCGCTCACAGCATACTTGATGAACA 31532 | || | |||| | |||||||| | ||||| |||| | || || | | || Sbjct 7266 GCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAAGC 7207 Query 31533 GCGCCCACTCATCCGGATGCGTTTCAGCGGTGTAACGGCGGATTTTGTAGTTCTTCGGCG 31592 | ||| || || || ||||| | ||||| || || || ||||| ||||| |||| Sbjct 7206 GTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGGCG 7147 Query 31593 TCGGCTTAGAGAAACGCCGAATCAGCGCCTTGCCGCGTTTATCTTTCGCGTTGTCTGCGG 31652 | || ||| |||| ||| | |||| |||||| || |||||||| ||| || ||| Sbjct 7146 TGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGAGCTCCACGG 7087 Query 31653 ATACGCCCAGCACTTCGCACAGCGCATCAAGTGAACCCGGCAGCGCGT 31700 ||| ||||||||||| || || || |||||||||| ||||| Sbjct 7086 GAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGT 7039 Score = 183 bits (202), Expect = 8e-42 Identities = 538/820 (66%), Gaps = 8/820 (1%) Strand=Plus/Minus Query 27032 AAAAACAGGGCGATTATACCCCGATTGCTTTTGCCGTACTGGGCCTATGCGCTCCACAAC 27091 |||||| || || || |||| || | ||| || ||||| ||||| || || || | Sbjct 10790 AAAAACTGGCCGTGGATGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGAT 10731 Query 27092 CTGTAAATAGTGTTCGAGGTTCCACCCCTGACTGAAAAACGCCATATGATGGCCGCCGTC 27151 ||| |||||| ||| | ||||||| | ||| |||| |||| ||| || |||||||| Sbjct 10730 CTGCGAATAGTATTCCAAGTTCCACGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTC 10671 Query 27152 TTGTAGCGATATGCCGTGCCCGGCTGACGCAGGGTGGACGCATAAGATTTCGATTTCACC 27211 ||| | | |||||||||||| || ||||| | ||| || ||| | || Sbjct 10670 TTGCAAGTTAAGGCCGTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCC 10611 Query 27212 ACGGTTCCACGCTTCCATCT-GCTTATTGCCCTTAGCGCCTTTGGAAAACGCCTGTGCTT 27270 |||||||| || || | || |||| || |||||| | ||| || | Sbjct 10610 TTGGTTCCACAGCTCGATATTGCGGGTTGCGGTTTTA-CCTTTGCCCAGTGCCACGGCCT 10552 Query 27271 GTGGGAATCGCTTAAGGATGCGTTCCAGTTCATGCTTAAACTGATAGGCCACCAGTAACG 27330 |||||| ||| |||||||||||| | ||||| | | | ||||||||| | | | Sbjct 10551 CGGGGAATTTCTTCAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTG 10492 Query 27331 GCGCACCCTGTAACTCCTCGACAATCGACTCAAGCGCGTCCAGTTTCGTGTCGTGCACTT 27390 ||||||| | | ||| || ||| ||||| ||||||||||| ||| || || | Sbjct 10491 GCGCACCGTTGAGCTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAA 10432 Query 27391 TCTCCCAGTCTTTGGTAGCCTCACCATCTGGCCCCGACACATATACGGCGCCGGATGCAA 27450 ||||||||| || | |||||| || | | | |||||| ||||| ||||| || | Sbjct 10431 GCTCCCAGTCACCTGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTA 10372 Query 27451 TCTGGAGGCATTTCGACGTTTTAGCCGCGGCGTTAGCGGCCTCAACTTCTCCGCTC-TCC 27509 |||| | |||||| | ||| || ||||| || ||| |||| || |||| ||| ||| || Sbjct 10371 TCTGCAAGCATTTAGCCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCG 10313 Query 27510 AGTTCCGCGAATAACTTCTCCTCCATATCGATGTAGGCTTGGCGCGCTTTCTTCGGCAGG 27569 || || || | | || | |||||||| ||| ||| ||||||| |||||| Sbjct 10312 AGATCGGCCTTCAGCAGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGG 10253 Query 27570 TCAATCTCAACCGGTACAATAACCGGCGCTTCACAACCGAACCACTCGGCGGCATCAATG 27629 | | | | ||| || | || || | ||||||||||||| | | | || || | Sbjct 10252 TAGACCGGACGCGGAACTACAATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACC 10193 Query 27630 GTCAGGCTGATATCCTTCATCTTCTGATGAATCTCGTTATCCGCGC-CGGGGCGGGCATG 27688 ||||| ||| || || |||| || | || | | ||| ||| ||| Sbjct 10192 GTCAGCGAGATGTCGGCCAATGCACGATGTATGCGCTGTTCTGATCTCGGCATGGGTATG 10133 Query 27689 -GTACTCCCGCGCCATAGCCGATTTACCTTTCTGTACTGAATTAAACCATCTGTCGGTGA 27747 | || | ||| | || | | |||| || || | || | | ||| ||| Sbjct 10132 AGGTCTACGGCGTATTTGCTG--TCGGCTTTTTGCTTCGAGGTGAAATACCGGTCTTTGA 10075 Query 27748 ATGCGGTGTAGGAGGACCCCAGACGCTCACCCGCGTCTATAAACCAGTTCTGGCCCCACA 27807 | |||||| | || | ||||||||| | || || ||||||||||||||||| ||||| | Sbjct 10074 ACGCGGTGAAAGATGTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAA 10015 Query 27808 AGTCTTTGAGGCCGTTAGGCGATGGTGTACCGGTCAGGTT 27847 || ||||| ||||| | | || ||||| || | ||| Sbjct 10014 GATCCTTGAGCCCGTTTGTAGCGGGCGTACCCGTTAAGTT 9975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138679437783068