Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq139046 275 2e-69 seq105608 87.8 5e-13 seq40252 80.6 7e-11 >seq139046 Length=22897 Score = 275 bits (304), Expect = 2e-69 Identities = 960/1472 (65%), Gaps = 45/1472 (3%) Strand=Plus/Minus Query 821 CCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTGGAGCCGTGGCAG 880 || ||||| || || || ||||| || ||||| |||| ||| || ||||||||| Sbjct 22407 CCTCACACAAAAGGTGAATGGGCTGCGAAGGGGATGAAGATCAAGCTCGAACCGTGGCAG 22348 Query 881 CTCTTTGTGATCTGCTGCGCGTTT--GGCTGGGTCAATAAAGGCTCCCGGCTG-CGCCGC 937 ||||| | | || | ||| || ||| | ||||| || |||| || || Sbjct 22347 -TCTTTCGGTT-TGGGGATGATTTACGGGTGGTTGCGCAAAGGGTCA-GGCTATCGTCGT 22291 Query 938 TTCCGTGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGT 997 || ||||||| |||| |||| | |||||||| ||||| || || | | | ||||| Sbjct 22290 TTTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCCGCCGGG 22231 Query 998 GTCGCCCT-GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGT 1054 | | | | | |||| | ||| ||| |||||| ||||| ||||| || || || Sbjct 22230 ATAGGCGTTGCGATGTTCGTCGCC---GATCGCGAGTTCGGCGCCGAAGTATACTCAGGC 22174 Query 1055 GCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCTCGACTGATGTGTAAACGC 1114 || |||||| ||||||||||| ||| || || |||||||| || | ||| || | Sbjct 22173 GCAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGA-TACAGAA 22115 Query 1115 ACACCCATG-CTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCC 1173 | |||| ||| |||| || ||| |||| || ||| ||||| | |||||| Sbjct 22114 AAGCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGGCCGTCC 22056 Query 1174 GGAGGA-TGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACCCC 1232 | | |||| | |||||||||||| | | || | ||||| |||||| || ||| Sbjct 22055 CCGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAAGCCCCT 21996 Query 1233 ACTGTGCGGTGGTGGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCACAATGC 1292 ||| ||| | | ||||||| |||||| || ||| || || ||| ||| |||| Sbjct 21995 CCTGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACACTATGC 21936 Query 1293 TTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGGTACA 1352 | ||||| ||||| || || || ||||| | | | |||||| || || |||||| Sbjct 21935 TCACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAGGGTACC 21876 Query 1353 ACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGG 1412 |||| || ||||||||| ||| || ||| | | || |||||| || | | Sbjct 21875 TGCTTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACCAGACTG 21816 Query 1413 TGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCG 1472 |||| | || || || || | || | | | ||||| | || || ||||| | Sbjct 21815 TGCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATTGGACAG 21756 Query 1473 ACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTT 1532 | ||| | ||| ||||| || || ||| | |||||||| || | || || ||| Sbjct 21755 ATCCGGCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAGA--TTT 21698 Query 1533 TGTTAATTCAGCAGCAGCGTGCGAA------AAATAACGCCGGTCTGGCA--AACGTCTT 1584 | || | ||| |||| || || |||| | | | | || ||||| | Sbjct 21697 TCTTGAG--AGC--CAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAACGT--T 21644 Query 1585 TAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTGGTGAG 1644 |||||||| || | || ||| | | | | | ||||||| |||| | Sbjct 21643 CAAAACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACATGGTTAA 21584 Query 1645 CTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCA-GCCGTGCA 1703 |||| | | ||||| |||||| | ||||| | || || ||| | || | | || | Sbjct 21583 CTGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGAAGTTAA 21524 Query 1704 TTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTATACCC 1763 || |||||| ||| | ||||||||||| || ||||||||||||| || || | | Sbjct 21523 TTTAGGCCTT-GACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGTTCTGGC 21465 Query 1764 GCGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATG 1823 |||| || ||||||||| |||||||| | | ||||| ||||||| ||||||| Sbjct 21464 GCGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGCCGTATG 21405 Query 1824 ACACGGTGTATAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCTTTCAGAAAT 1883 ||||| | || || | | | ||| ||| || | || || ||| |||||| | Sbjct 21404 ACACGATATA---CGATGTGGATAAT-AAG-----CGTATGGCTGAGCGCCTTCAGACTT 21354 Query 1884 GGGTGGAAATGGGCGTTCT-GACCGTTACCGATGGTGCAGAGGTGGATTATCGCTACATC 1942 || | | | || ||| || | || || || || || || || ||||| || Sbjct 21353 GGCTTGCAGGTGGATATCTCGAGAG-CACAGACGGCGCTGAAGTTGACTATCGGGCTATT 21295 Query 1943 CTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCT 2002 || | | ||| | | | ||| | || ||| || | || | || |||||| Sbjct 21294 CTGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGTGGCGCATGCAGCGATAGACCCT 21235 Query 2003 TTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAATCCCGTTACTATC 2062 |||||| |||| |||| || | || | ||| || | | | | || || |||||| Sbjct 21234 AGCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTCACTATC 21175 Query 2063 GTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAGCTGGAGGCAGCGATTGAATCG 2122 | || ||||| ||||||| ||||| ||||| || || || ||||| || ||| | Sbjct 21174 ATTCAAAACTTTCAGCATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATAGAAGCC 21115 Query 2123 GGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAATGTGGTCGGC 2182 || || || ||||| ||||| || || |||||||| | |||||| |||||||| |||| Sbjct 21114 GGTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTGATCGGT 21055 Query 2183 AAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCGTCAAAGAGCAGGCGGAAAACAAA 2242 ||| || | || ||||| || ||| | || | ||| || || ||| ||| || |||||| Sbjct 21054 AAATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGACAACAAA 20995 Query 2243 ATCGATGGTGCAGTTGCGCTGATTATGGCGGT 2274 || || ||||| || || |||| ||||| || Sbjct 20994 ATAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 >seq105608 Length=1395 Score = 87.8 bits (96), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 28809 TTATCAGAAATCACCAGCAGTTTGTCAGGAATCATTTGAAGTCTTTTAACATATAT--TT 28866 |||||||||| || || |||| | |||||||| || | ||| |||| | || Sbjct 787 TTATCAGAAAGAACAAGGAGTTCATTTTTCATCATTTGCAGACGTTTTACATGGAGCGTT 846 Query 28867 TGTCATCAAAACCAAAGACATATATACCATCACCATCAAACTGATTGATGCTGACATCAA 28926 |||| || || | || ||||| || |||||||||||||| || ||||| ||||||||| Sbjct 847 TGTC--CATAAGCGAAAACATAAATTCCATCACCATCAAAATGCTTGATATTGACATCAA 904 Query 28927 CGAAGATGAGATCTCCTGGCTCAATGGTTGGACACATACTGTCCCCACGAACGTTGATAA 28986 || || ||| || |||||||||||| | ||| || || || ||| |||| | Sbjct 905 TAAAAATTTCATCACCAGGCTCAATGGTTCCTCTCATGCTATCGCCTTTAACTGTGATGA 964 Query 28987 CTTTGATGTGATTGGCTGGTCGTCCGCCGAA 29017 ||| | || | ||| || |||||||| Sbjct 965 TTTTAACATGTTCACTTGGACGGCCGCCGAA 995 >seq40252 Length=19659 Score = 80.6 bits (88), Expect = 7e-11 Identities = 60/69 (87%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 40284 CACCTGTGTTGT-TCTGAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTG 40342 ||||||| |||| | |||||||| | |||||||||||||||||||||||||||| | || Sbjct 15190 CACCTGTTTTGTCTATGAGGTGATGACATCACCTCTGTTCAGGTGGCCAAATTCACTATG 15249 Query 40343 CCACTTCAA 40351 ||||| ||| Sbjct 15250 CCACTACAA 15258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132379457334124