Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq43985 167 2e-36 seq123102 147 2e-30 seq88566 131 2e-25 seq119770 104 2e-17 seq21876 104 2e-17 >seq43985 Length=4878 Score = 167 bits (184), Expect = 2e-36 Identities = 388/584 (66%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 138670 GACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAA 138729 ||||| ||||| | || | |||||||| | ||||||||| || || | ||||| Sbjct 2205 GACCAATCCCAGAGGTCAGTTGGTTTTTTATCCCACATATCATATTGAAGTATTCCTTTG 2146 Query 138730 CTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTC 138789 || | || |||||| || | || || |||| | | || ||||| || ||| Sbjct 2145 CTGACTGGTGAGCCTTCATAAGTTTCATAAGTACCATATTTTTCAGCCAATTCACAGCTA 2086 Query 138790 GCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCG 138849 || || | || |||||||| |||||||| ||| || ||||| | | |||| Sbjct 2085 GCTTCTAATGCGCCATAGTACATAGTTTCAAAAATTTGTTGATTTAAGAGCGCAGCCTGC 2026 Query 138850 GCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACT 138909 |||||||||| || || | | | || ||||| || | ||||| | ||| | Sbjct 2025 TCGCTCTCGTATGGGTAACGCATAAGGATTAAAGCGTCTGCAAAACCTTGTATGCCAATG 1966 Query 138910 CCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACA 138969 || | ||||||||| | | ||| ||| ||||| | | ||||||| |||| Sbjct 1965 CCAATAGGGCGATGTCTGAAATTAGACTTCTTTGCCTCGGGCAATGGATAATGATTTATG 1906 Query 138970 TCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAA 139029 ||||||||||| |||| ||| || || | | || | ||| || || | |||| Sbjct 1905 TCGATGATTTTATTTAGATTACGTGTTACAGTCATTGTAACCTCCTTCAAACGCTTAAAA 1846 Query 139030 TCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCT 139089 ||||| || || | || | ||||| | |||| |||||| ||| Sbjct 1845 TCGTACGTTTT----TTCTGGTGTA--------ACAAACATATTGAGTGCAATCGATGCT 1798 Query 139090 ATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTAT--TCGACAATTTCGGCACACAAAT 139147 | || || || |||||||| || || |||| || || || ||||| | ||| |||| Sbjct 1797 AAATTACAAACAGCCACTTCATCTGGT--GCTGAATACTCAACTATTTCTGTACATAAAT 1740 Query 139148 TACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGT 139207 ||||||| || || || || | |||||||||||| || |||| ||||| ||||| |||| Sbjct 1739 TACTACATTTAATAGTGCCAATATTTTGTTGATTACTCTTTCTATTACATGCATCCTTGT 1680 Query 139208 AAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 | |||||||| |||||||| || || ||||| | || |||||| Sbjct 1679 ACAGCATATATGGTGTGCCTGTCTCTACTTGCGATTCAATAATG 1636 >seq123102 Length=1410 Score = 147 bits (162), Expect = 2e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| | || || |||||||| || | ||||| ||| | | Sbjct 816 ATGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCG 757 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||| ||||| || ||||| || ||||| || || || || || Sbjct 756 GATACCATCGAGAACGTTAAAGCAAAA-ATTCAAGATAAGGAAGGCATTCCCCCAGACCA 698 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCAGATTATA 24881 ||||||||| || || ||||| || ||||| |||||| || |||| || ||||| | Sbjct 697 ACAACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATG-GACGCACATTATCCGATTACA 639 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||||| ||||| |||||||| |||| |||| || || Sbjct 638 ACATTCAAAAGGAATCAACACTTCACTTGGTTCTGCGTCTGCGGGGTGG 590 Score = 113 bits (124), Expect = 4e-20 Identities = 122/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 24774 AAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGA 24833 ||| | |||| | ||| || ||||| ||||||||||| || || |||||||||||||||| Sbjct 973 AAATGTTAAAGCTAAA-ATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGA 915 Query 24834 TCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAACATTCAAAAG 24892 | || || || |||||| | ||||| | || ||| |||| |||||||| ||||| ||| Sbjct 914 TTTTCGCTGGCAAACAGTTAGAGGA-TGGACGCACATTGTCCGATTATAATATTCAGAAG 856 Query 24893 GAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||| | || || || || || | || ||||| Sbjct 855 GAATCTACATTGCATTTAGTATTACGCCTTCGTGGAGG 818 >seq88566 Length=1870 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || || |||||||| || || || || || ||| | || Sbjct 456 ATGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTCC 397 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | ||| || ||| ||||| ||||| || |||||||| || || ||||| Sbjct 396 GATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCAG 337 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| || ||||| || ||||||||||| || ||| || ||||||||| Sbjct 336 CAACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATAAC 277 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||||||||| || | || || || ||||| Sbjct 276 ATTCAAAAGGAATCTACGTTGCATTTAGTATTGCG 242 >seq119770 Length=1537 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || || || || || | || || || |||| | Sbjct 1092 ATGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGA-GCCATC 1034 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| ||||| || || |||||||| || || || ||||| Sbjct 1033 TGACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGATCA 974 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | || || ||||| ||||| | || ||| | | | || || || || Sbjct 973 ACAACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTACAA 914 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||||| ||||| ||||| ||| |||| ||||| Sbjct 913 TATTCAAAAAGAATCAACACTTCACCTGGTATTGCG 878 >seq21876 Length=2391 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||| ||||| | ||||| | || || |||||||| || | ||||| || |||| | Sbjct 740 ATGCAAATCTTCGTAAAAACTTTGACAGGGAAAACTATCACTTTAGAAGTCGA-GCCATC 798 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 799 CGACACTATTGAGAACGTCAAAGCTAAGATTCAGGACAAGGAAGGTATTCCTCCAGATCA 858 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 ||||||||| ||||| || || || || |||||||| Sbjct 859 ACAACGTTTAATCTTCGCTGGCAAGCAACTGGAGGA 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449115644228880