Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq139046 262 1e-65 seq28727 107 5e-19 >seq139046 Length=22897 Score = 262 bits (290), Expect = 1e-65 Identities = 885/1358 (65%), Gaps = 39/1358 (3%) Strand=Plus/Minus Query 874 CGCCGCTTCCGGGAGGTGTACACCGAAATCCCCCGTAAGAACGGCAAATCAGCAATCTCT 933 || || || || |||| ||| |||| | |||||||| ||||| || || | | | Sbjct 22296 CGTCGTTTTCGTGAGGCGTATTTCGAAGTTCCCCGTAAAAACGGTAAGTCTGTTCTGGCC 22237 Query 934 GCCGGTGTTGCCCT-GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTAT 990 ||||| | | | | | |||| | ||| ||| |||||| ||||| ||||| || Sbjct 22236 GCCGGGATAGGCGTTGCGATGTTCGTCGCC---GATCGCGAGTTCGGCGCCGAAGTATAC 22180 Query 991 TCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGT 1050 || || || |||||| ||||||||||| ||| || || |||||||| || | ||| | Sbjct 22179 TCAGGCGCAACGACACAGAAACAGGCGATGGAGGTTTTCCGCCCGGCCAGAATCATGA-T 22121 Query 1051 AAACGCACACCCATG-CTGACGGAAGCGTTCGGGATTGAGGTTAACGCCTCAAACATGAA 1109 | | | |||| ||| |||| || ||| |||| || ||| ||||| | Sbjct 22120 ACAGAAAAGCCCAGAACTGCAACAAGCCGCAGGTATTCAGGTGAATGCC-CAAACTTTGG 22062 Query 1110 CCGTCCGGAGGA-TGGCGCGCGGTTTGAACCGCTGATCGGCAACCCAGGTGATGGTTCAT 1168 |||||| | | |||| | |||||||||||| | | ||| | || || |||||| || Sbjct 22061 CCGTCCCCGGCAATGGCTCCCGGTTTGAACCGGTCGTAGGCGATCCCGGAGATGGTGCAA 22002 Query 1169 CACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGCTTTATACCA 1228 ||| ||| || | | ||||||| |||||| || ||| || || ||| || Sbjct 22001 GCCCCTCCTGCGCGATTATCGATGAATTTCACGAACACCAGACCTCAGCACTGTATGACA 21942 Query 1229 CAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCG 1288 | ||||| ||||| ||||| || || || ||||| | | | |||||| || || | Sbjct 21941 CTATGCTCACCGGTATGGGCGCCCGCCGGCAGCCGTTACTATTCATCATCACGACGGCAG 21882 Query 1289 GGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACG 1348 ||||| |||| || ||||||||| ||| || ||| | | || |||||| || Sbjct 21881 GGTACCTGCTTGACGGCCCGTGCTACACCAAGCGTAAAGAATGCCTAGAAATGCTCGACC 21822 Query 1349 GCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACT 1408 | ||||| | || || || || | || | | | ||||| | || || | Sbjct 21821 AGACTGTGCCAGATGAGGAGCTTTTTGCCTATATTTGGGACTTGGATGAGGAGGATGATT 21762 Query 1409 GGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCG 1468 |||| || ||| | ||| ||||| || || ||| | |||||||| || | || | Sbjct 21761 GGACAGATCCGGCGAATTTGGCTAAAGCAAACCCGAATCTCGGCGTGTCCGTATTCCGAG 21702 Query 1469 AATTTTTGTTAAGTCAGCAGCAGCGTGCGAA------AAATAACGCCCGTCTGGCA--AA 1520 | |||| || || ||| |||| || || |||| | | | | || || Sbjct 21701 A--TTTTCTTGAG--AGC--CAGCTCGCTAAGGCTGTAAATCAGCCAAGATTCGCCGGAA 21648 Query 1521 CGTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCT 1580 ||| | |||||||| || | || ||| | | | | | ||||||| | Sbjct 21647 CGT--TCAAAACAAAGCATTTGAACCAGTGGACCGCCTCAAAAGCAGGCTTTTTCAACAT 21590 Query 1581 GGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCA-GC 1639 ||| | |||| | | ||||| |||||| | ||||| | || || ||| | || | | Sbjct 21589 GGTTAACTGGAATAAGTGCGAAGATAAAACGCTGACGTTAGACCAATTCTACGGCAACGA 21530 Query 1640 CGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTT 1699 || ||| |||||| ||| | ||||||||||| || ||||||||||||| || || | Sbjct 21529 AGTTAATTTAGGCCTT-GACTTAGCGCGTAAGCTAGACCTGAACAGCATGGCACGGCTGT 21471 Query 1700 ATACCCGCGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGGTAC 1759 ||||| || ||||||||| |||||||| | | ||||| ||||||| | Sbjct 21470 TCTGGCGCGATATCGACGGTAAACGCCATTACTATTCCATATCGCCGCGGTTCTGGGCGC 21411 Query 1760 CGTATGACACGGTGTATAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCTTTC 1819 ||||||||||| | || || | | | ||| ||| || | || || ||| ||| Sbjct 21410 CGTATGACACGATATA---CGATGTGGATAAT-AAG-----CGTATGGCTGAGCGCCTTC 21360 Query 1820 AGAAATGGGTGGAAATGGGCGTTCT-GACCGTTACCGATGGTGCAGAGGTGGATTATCGC 1878 ||| ||| | | | || ||| || | || || || || || || || ||||| Sbjct 21359 AGACTTGGCTTGCAGGTGGATATCTCGAGAG-CACAGACGGCGCTGAAGTTGACTATCGG 21301 Query 1879 TACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATC 1938 || || | | ||| | | | ||| | || ||| || | || | || Sbjct 21300 GCTATTCTGGCCGCTGCCGTGGAGACTAACGAGGCCAACCCAGTGGCGCATGCAGCGATA 21241 Query 1939 GACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAATCCCGTT 1998 |||||| |||||| |||| |||| || | || | ||| || | | | | || || Sbjct 21240 GACCCTAGCGGAGCTACCGCGCTGAGCCACGGGCTGGATGACGAGGGCTTAACGCCAGTC 21181 Query 1999 ACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAGCTGGAGGCAGCGATT 2058 |||||| | || ||||| ||||||| ||||| ||||| || || || ||||| || Sbjct 21180 ACTATCATTCAAAACTTTCAGCATATGTCAGACCCAATGAAGGAACTCGAAGCAGCAATA 21121 Query 2059 GAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAATGTG 2118 ||| | || || || ||||| ||||| || || |||||||| | |||||| |||||||| Sbjct 21120 GAAGCCGGTCGATTCCATCACGACGGAAACCCGATCATGACATTCTGTATCAGCAATGTG 21061 Query 2119 GTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCGTCAAAGAGCAGGCGGAA 2178 |||| ||| || | || ||||| || ||| | || | ||| || || ||| ||| || Sbjct 21060 ATCGGTAAATACCTTCCGGGTAATGACGATGTCGTCAGGCCAGTGAAGGAGTCGGCCGAC 21001 Query 2179 AACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGT 2216 |||||||| || ||||| || || |||| ||||| || Sbjct 21000 AACAAAATAGACGGTGCCGTCGCATTGATAATGGCTGT 20963 >seq28727 Length=1947 Score = 107 bits (118), Expect = 5e-19 Identities = 244/366 (67%), Gaps = 16/366 (4%) Strand=Plus/Plus Query 26200 CTTTGGTCTTCGCTTCGACAGACTCCATCAGGGAGCGTTTGCCGCTGAAGTCATTATCTT 26259 ||||| |||| || ||||| | ||||| |||||||||||| ||| |||||| ||||| Sbjct 271 CTTTGCTCTTGGCCTCGACGGTTTCCATGAGGGAGCGTTTGGCGCCAAAGTCAGAATCTT 330 Query 26260 CAAAATCAGCGGTCTGGTTTGCT-------TCAATCGTGATTTTACGGACAGCCGCAGCC 26312 || |||||| ||||| || |||||||||||||| ||| | ||| Sbjct 331 CA-------TGGTCTGAATTGCTGGAAGACTCGATCGTGATTTTACGCACACCGGCAATA 383 Query 26313 GCTTTTGTTGCCTGAATAGCGTCACCATTAGC-ATCAAAGCCCACAAGATAGTCGGCCCA 26371 |||||| | | | | | || || | || | || ||| ||| ||| || ||||| Sbjct 384 GCTTTTTTGATATCTAAAACTTCGCCGTCTGCGGTGAATGCCAGCAA-ATATTCAGCCCA 442 Query 26372 GTCTTCAATCCATTCTGCCAGTGACTTCTGGGAGTTACGCTCGCCGTTAACAGACAACAG 26431 ||||| | ||| || ||||| |||||| || || |||||| | | || ||| Sbjct 443 ATCTTCCAGCCACTCAGCCAGCTCTTTCTGGCGATTTTTCTGGCCGTTGATATTCAGCAG 502 Query 26432 AGCAGAGAACGGTGCTGTCTTTTTCAGTTTGAGTGTGGCGGTGTTATCTGCGTGACCTGG 26491 || || || || || || || || || | | || || ||||| || ||||| || Sbjct 503 CGCTTTAAATGGGGCCGTTTTCTTGAGCTTTAACGCTGCAGTATTATCCGCATGACCCGG 562 Query 26492 TTCATCAATAGTACCCAGGTTAAGCACACTGACGGCACGCATATTATCAGCATCGATAAA 26551 || | || || |||||||||| ||| | || || ||| | ||||| || ||||| Sbjct 563 CTCGTTGATGGTGCCCAGGTTAAACACGGTCACCGCCTCCATGCTTTCAGCGTCAATAAA 622 Query 26552 GCAGCG 26557 || ||| Sbjct 623 GCTGCG 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126894129529440