Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_022752.1 Length=42665 Score E Sequences producing significant alignments: (Bits) Value seq139038 161 3e-35 >seq139038 Length=11747 Score = 161 bits (178), Expect = 3e-35 Identities = 538/824 (65%), Gaps = 20/824 (2%) Strand=Plus/Minus Query 28076 TCGTCGTGATAATATCCGCGCGCCAGGTTCTGAGGCTGAAAACCTTTCCCGGCCCATCGC 28135 |||||||| ||||| || || || || ||||| || ||||| ||| ||| ||||||| Sbjct 7744 TCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTT 7685 Query 28136 AGTGTTCGCTTCGCTCCGCCGTATTGCAGACAACCTCGACGGCGGTCATCGGAAGAACGA 28195 || |||||||| || || || ||||| |||||||| || || ||| | |||| || || Sbjct 7684 AGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGA 7625 Query 28196 CCTAACAGCAACGGCGCGTATTTCGTCGATGCGGTGGAAGCAGCCCCGAGACGCATCTCG 28255 || | | ||| |||||| |||||||| || || || || ||||| ||||| || Sbjct 7624 CCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCA 7565 Query 28256 ATAATAGTGCGCGCATCGTCCGGTAAATCCTCATCTGCCAGCAAGTCGTTAAGCGTCGAC 28315 || ||| ||| || ||||| || | ||| |||| | |||| ||| | || | Sbjct 7564 ATGATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCC 7505 Query 28316 TTCTGTGCGTTGTGGATGCGGTGTGCCGGTGCTAGTTCCTGTAAAATAGGCAAGAAGTCT 28375 ||||| || || | | | ||| ||||| ||||| | | || |||| ||| || Sbjct 7504 TTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCC 7445 Query 28376 TTGCCGGTTAGTGAACC---GCCATATTTACGTTGGGCTTCTTCCTGTAACTCTTCTTTA 28432 ||||| || ||| ||| ||||| || || | | | |||| ||| Sbjct 7444 GCACCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTA 7388 Query 28433 TGGCGCGTGACTG-CTTCAATCGCTGCTTCCGCCAATGCCAC-ATCAACCTTAAATCCTC 28490 || | | || || | | | ||| || | ||| | ||| || | ||| |||| Sbjct 7387 TG-CTCCTGTATGGCCTGTACCGC-GCAACGAGCAAGCTCGGTATCGACGTAAAACCCTC 7330 Query 28491 GGTCATTAATCACCTGGTCTAAGTGC-AGCACGCGGTCTTCGAACTCAG---AATTCCCC 28546 |||||||||| | |||||| ||| | | | |||| ||| | ||| | | |||| Sbjct 7329 GGTCATTAATGATCTGGTC-AAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCC-- 7273 Query 28547 CACTTAGGCATTTTCTTATACACTTCACGCATGGACGTAATGTCGCTTTTTGCGTATGCA 28606 | | |||| | | | | |||||||| || || || |||| |||||| | Sbjct 7272 -ATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCT 7214 Query 28607 ATAAATTCTGCCCACTCTTTTGGGTGGGTATCGGCAGTATAACGTCGAATCTTATAGTTC 28666 | ||| | ||| |||| ||||| || | || || || || ||||| || ||| Sbjct 7213 ACAAAGCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTC 7154 Query 28667 TTGGGCGTAGGCTTACTGAATCGCTGTATCAGCGCCTTACCGCGTTTATCCTTAGCCATG 28726 || ||||| || |||| ||| ||||| |||| ||||||||| ||||| || || | | Sbjct 7153 TTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGA-G 7095 Query 28727 CTTG-CGTCAATGTTTAAAACCTCACACAGCGCGGCCAGTGAACCCGGGAGGGCATGTCG 28785 || || || ||||| || || || || | || |||||||| | || | ||| Sbjct 7094 CTCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCG 7035 Query 28786 GAACGCGACTATCATAGTGTCTATAATGTTTTCTACCAGGAGTTCGAATCCCCAGCAATG 28845 | | || | | ||| ||||| || |||| || ||| ||| ||||| || | Sbjct 7034 GTAGGCCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCCCAACAGTT 6975 Query 28846 CTTAATAACTGGTCGGTCGAACATAAGGAAGTTTTGGCCTACCA 28889 | | || |||| ||||||||| | |||||||||||| |||| Sbjct 6974 CGACAGCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Score = 156 bits (172), Expect = 1e-33 Identities = 381/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 24572 TGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAGTGCTCC 24631 ||||| ||||| | || || || || ||||| || ||||| | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 24632 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGCCCGCCGTCCTGTAAATTCAAACC 24690 | |||||| | | | | ||||| ||||||| || |||||||| || || || | || Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 24691 ATGGCCCGCCGATG-CAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCAAGATT 24749 || |||| || || | ||||| | | | || ||| | ||| ||||||| | Sbjct 10655 GTG-CCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCT 10597 Query 24750 CCATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCGCCTA 24808 | || | || || | || |||||| | | ||| |||| ||||||| | | Sbjct 10596 CGATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTC 10538 Query 24809 AGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTGCAAC 24868 || ||||| || | || || | | ||||||||| | ||| |||||||| | | | Sbjct 10537 AGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGC 10478 Query 24869 TCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTCTTTC 24928 || || ||| ||||| | ||| || || ||| ||| || | ||||||||| Sbjct 10477 TCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCT 10418 Query 24929 GTTGCTTCACCATCCGGCCCCGACACATACACGGCACCGGAAGCAATCTGCAAGCACTTA 24988 || | ||||| || | | | |||||| |||||||||||||| ||||||||||| ||| Sbjct 10417 GTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTA 10358 Query 24989 GCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTC-TCCAGTTCCGCGAATAA 25047 ||||| || || || || ||| | || || |||| ||| ||| || || || || | Sbjct 10357 GCCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCAG 10299 Query 25048 CTTCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAACCGG 25107 | || | |||||||| ||| ||| ||||||| ||||||| | | | ||| Sbjct 10298 CAGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGG 10239 Query 25108 TACAATAACCGGTGCTTCACAACCGAA 25134 || | || || ||||||||||||| Sbjct 10238 AACTACAATCGCCTCTTCACAACCGAA 10212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136181169674004