Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_022754.1 Length=42749 Score E Sequences producing significant alignments: (Bits) Value seq139038 190 6e-44 >seq139038 Length=11747 Score = 190 bits (210), Expect = 6e-44 Identities = 548/832 (66%), Gaps = 36/832 (4%) Strand=Plus/Minus Query 28676 TCGTCGTGATAATATCCGCGCGCCAGGTTCTGAGGCTGAAAACCTTTCCCGGCCCATCGC 28735 |||||||| ||||| || || || || ||||| || ||||| ||| ||| ||||||| Sbjct 7744 TCGTCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTT 7685 Query 28736 AGTGTTCGCTTCGCTCCGCCGTATTGCAGACAACCTCGACGGCGGTCATCGGAAGAACGA 28795 || |||||||| || || || ||||| |||||||| || || ||| | |||| || || Sbjct 7684 AGGGTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGA 7625 Query 28796 CCTAACAGCAACGGTGCGTATTTCGTTGATGCAGTGGACGCGGCCCCCAGACGCATTTCA 28855 || | | || |||||| || ||||| || ||||| || || || ||||||||| Sbjct 7624 CCCTCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCA 7565 Query 28856 ATGATCATGCGGGCGTCGTCCGGTAAATCCTCGTCGGCTAACAGGTCGTTAAGCGTCGAC 28915 ||||| | |||||| ||||| || | ||| || ||| |||||| | || | Sbjct 7564 ATGATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCC 7505 Query 28916 TTCTGCGCGTTGTGGATGCGGTGCGCCGGTGCTAGTTCCTGTAAAATAGGCAGGAAGTCT 28975 ||||| || || | | | ||||||||| ||||| | | || |||||||| || Sbjct 7504 TTCTGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCC 7445 Query 28976 TTGCCGGTTAG---TGAACCGCCATATTTG--CGT----TGGGCTT---CTTC-CTGTAA 29022 ||||| || ||| ||| |||||| | | | ||||| ||| | | | Sbjct 7444 GCACCGGTAAGACCTGA---GCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTA 7388 Query 29023 CTCTTCTTTATGGCGCGTCACCGCTTCAATTGCACTCTCGGCGAGGGCAACATCGACCTT 29082 || || |||||| || ||||| | ||| ||||| |||||| | Sbjct 7387 TGCTCCTGTATGGCCTGT-ACCGCGCAACGAGCAAGCTCGG---------TATCGACGTA 7338 Query 29083 AAATCCACGGTCATTAATTACCTGGTCCAG-ATGAAGCACGCGGTCTTCGAACTC---AG 29138 ||| || ||||||||||| | |||||| || | ||| | |||| ||| | ||| | Sbjct 7337 AAACCCTCGGTCATTAATGATCTGGTCAAGCACTAAG-ATCCGGTTTTCAATCTCCGTGG 7279 Query 29139 AATTCCCCCACTTAGGCATTTTCTTATACACTTCACGCATGGACGTAATGTCGCTTTTTG 29198 | || ||| | |||| | | | | |||||||| || || || |||| || Sbjct 7278 AGTT---CCATGTTGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTG 7222 Query 29199 CGTATGCAATAAATTCTGCCCACTCTTTTGGGTGGGTATCGGCAGTATAACGTCGAATCT 29258 |||| | | ||| | ||| |||| ||||| || | || || || || |||| Sbjct 7221 CGTAGTCTACAAAGCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCT 7162 Query 29259 TATAGTTCTTGGGCGTAGGCTTACTGAATCGCTGTATCAGCGCCTTACCGCGTTTATCCT 29318 | || ||||| ||||| || |||| ||| ||||| |||| ||||||||| ||||| | Sbjct 7161 TGTAATTCTTAGGCGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTT 7102 Query 29319 TAGCCATGCT-TGCGTCAATGTTTAAAACCTCACACAGCGCGGCCAGTGAACCCGGGAGG 29377 | || | ||| || || ||||| || || || || | || |||||||| | Sbjct 7101 TGGCGA-GCTCCACGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAAC 7043 Query 29378 GCATGTCGGAACGCGACTATCATAGTGTCTATAATGTTTTCTACCAGGAGTTCGAATCCC 29437 || | |||| | || | | ||| ||||| || |||| || ||| ||| ||| Sbjct 7042 GCGTATCGGTAGGCCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCC 6983 Query 29438 CAGCAATGCTTAATAACTGGTCGGTCGAACATAAGGAAGTTTTGGCCTACCA 29489 || || | | | || |||| ||||||||| | |||||||||||| |||| Sbjct 6982 CAACAGTTCGACAGCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Score = 168 bits (186), Expect = 2e-37 Identities = 386/568 (68%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 23981 TGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAGTGCTCC 24040 ||||| ||||| | || || || || ||||| || ||||| | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 24041 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGCCCGCCGTCCTGTAAATTCAAACC 24099 | |||||| | | | | ||||| ||||||| || |||||||| || || || | || Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 24100 ATGGCCCGCCGATG-CAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCA-AGCT 24157 || |||| || || | ||||| | | | || ||| | ||| ||||||| |||| Sbjct 10655 GTG-CCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCT 10597 Query 24158 TCCATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCGCCT 24216 | || | || || | || |||||| | | ||| |||| ||||||| | | Sbjct 10596 -CGATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTT 10539 Query 24217 AAGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTGCAA 24276 || ||||| || | || || | | ||||||||| | ||| |||||||| | | Sbjct 10538 CAGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAG 10479 Query 24277 CTCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTCTTT 24336 ||| || ||| ||||| | ||| || || ||| ||| || | ||||||||| Sbjct 10478 CTCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACC 10419 Query 24337 CGTTGCTTCACCGTCCGGCCCTGACACATACACGGCACCGGAAGCAATCTGCAAGCACTT 24396 || | |||||||| | | | |||||| |||||||||||||| ||||||||||| || Sbjct 10418 TGTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTT 10359 Query 24397 AGCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTC-TCCAGTTCCGCGAATA 24455 |||||| || || || || ||| | || || |||| ||| ||| || || || || | Sbjct 10358 AGCCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCA 10300 Query 24456 ACTTCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAACCG 24515 | || | |||||||| ||| ||| ||||||| ||||||| | | | || Sbjct 10299 GCAGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCG 10240 Query 24516 GTACAATAACCGGCGCTTCACAACCGAA 24543 | || | || || | ||||||||||||| Sbjct 10239 GAACTACAATCGCCTCTTCACAACCGAA 10212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136449525839172