Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq123102 140 5e-28 seq88566 132 8e-26 seq138766 123 4e-23 seq119770 118 2e-21 >seq123102 Length=1410 Score = 140 bits (154), Expect = 5e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 146050 CATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAA 146109 |||| || |||||||| || ||| | || || || | | ||||| ||| ||||||| | Sbjct 1025 CATTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCTGATACCATTGAAAATGTTA 966 Query 146110 AAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAG 146169 || |||||| ||| ||||||||| || ||||| ||||||||| | | ||||| || | Sbjct 965 AAGCTAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAACAACGTTTGATTTTCGCTG 906 Query 146170 GTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTA 146229 | ||||| ||||| ||| | || || | ||||||||||| || || ||||| || Sbjct 905 GCAAACAGTTAGAGGATGGACGCACATTGTCCGATTATAATATTCAGAAGGAATCTACAT 846 Query 146230 TCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||||||| | | ||||||| ||||||| Sbjct 845 TGCATTTAGTATTACGCCTTCGTGGAGGTATGCAAATATT 806 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | |||||||| || || ||||| || || | || || |||| | | Sbjct 815 TGCAAATATTTGTTAAAACATTGACTGGCAAAACTATCACATTGGAAGTTGAACCTTCGG 756 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||||| ||| ||| ||||||||||| || || |||| Sbjct 755 ATACCATCGAGAACGTTAAAGCAAAAATTCAAGATAAGGAAGGCATTCCCCCAGACCAAC 696 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || || || | || ||| | || ||| | ||||| || | Sbjct 695 AACGTTTAATTTTCGCCGGCAAGCAGCTTGAGGATGGACGCACATTATCCGATTACAACA 636 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| ||||| || Sbjct 635 TTCAAAAGGAATCAAC 620 >seq88566 Length=1870 Score = 132 bits (146), Expect = 8e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | ||||| | || || ||||| || || |||| || |||| | || Sbjct 455 TGCAAATATTCGTTAAAACCCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTCCG 396 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| || |||| ||| || || ||| ||| ||||| |||||||| ||||| | Sbjct 395 ATACTATTGAACATGTCAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCAGC 336 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || ||||| | || || |||| || |||||||| | Sbjct 335 AACGTTTAATTTTTGCTGGCAAACAGCTGGAAGACGGACGAACTTTGGGTGATTATAACA 276 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||| || | ||||||||||| || | |||||||| Sbjct 275 TTCAAAAGGAATCTACGTTGCATTTAGTATTGCGTCTCAGAGGAGG 230 >seq138766 Length=1258 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||||||| |||| ||||||||||| || | || || || | || Sbjct 641 TGCAAATCTTCGTAAAAACACTAACGGGAAAAACAATAACACTGGAGGTGGAGCCATCCG 700 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | | || | ||||| || |||||||| |||||| || |||||||| ||||| | Sbjct 701 AAAATGTTGAGAATGTCAAGGCCAAAATACAGGATAAAGAGGGGATTCCACCAGATCAGC 760 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| ||||| || | || ||| ||||| | | ||||| |||| Sbjct 761 AGAGACTGATCTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACACTTTCCGATTACAATA 820 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 |||| ||||| || || |||||| Sbjct 821 TACAGAAAGAGTCTACAATCCAT 843 >seq119770 Length=1537 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||| |||| || || || || || | || || || | | Sbjct 1091 TGCAAATTTTCGTCAAAACACTAACTGGCAAGACCATCACCTTAGAGGTGGAGCCATCTG 1032 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| ||| || || ||||||||| |||||||| ||||||| Sbjct 1031 ACACCATTGAAAATGTCAAAGCTAAGATTCAGGATAAAGAAGGTATTCCACCAGATCAAC 972 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || ||||| || || ||||||||||| ||| | || || | || || |||| Sbjct 971 AACGTCTTATTTTCGCCGGAAAACAATTAGAAGATGGACGTACTCTATCCGACTACAATA 912 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || | ||||| || || | || |||| Sbjct 911 TTCAAAAAGAATCAACACTTCACCTGGTATTGCGTCTACGTGGTGGTA 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784799983834320