Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq88566 156 3e-33 seq123102 152 4e-32 seq21876 132 4e-26 seq119770 114 1e-20 >seq88566 Length=1870 Score = 156 bits (172), Expect = 3e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||||| || ||||| | ||| ||||| ||||||||||||||||| | Sbjct 230 CCTCCTCTGAGACGCAATACTAAATGCAACGTAGATTCCTTTTGAATGTTATAATCACCC 289 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || || |||||||||||| | || || | ||||||||| || ||| Sbjct 290 AAAGTTCGTCCGTCTTCCAGCTGTTTGCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 349 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| || | ||||||| ||| | ||| || ||| |||| || Sbjct 350 ATTCCTTCCTTATCTTG-AATCTTGGCTTTGACATGTTCAATAGTATCGGAAGGTTCAAC 408 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 ||||| || || ||||| || || | ||||||||| ||||| ||||||| Sbjct 409 CTCAAGTGTGATGGTTTTACCCGTAAGGGTTTTAACGAATATTTGCATTT 458 >seq123102 Length=1410 Score = 152 bits (168), Expect = 4e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||| || |||||| ||||| ||||| || ||||| ||||||||||| ||||| | Sbjct 590 CCACCCCGCAGACGCAGAACCAAGTGAAGTGTTGATTCCTTTTGAATGTTGTAATCGGAT 649 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||| || | || || | ||| || || || ||| Sbjct 650 AATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAAATTAAACGTTGTTGGTCTGGGGGA 709 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||||| ||| || | || | || || ||| |||| || Sbjct 710 ATGCCTTCCTTATCTTG-AATTTTTGCTTTAACGTTCTCGATGGTATCCGAAGGTTCAAC 768 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || |||||||||||||| || |||||||||||||| ||||| Sbjct 769 TTCCAATGTGATAGTTTTGCCAGTCAATGTTTTAACAAATATTTGCAT 816 Score = 104 bits (114), Expect = 2e-17 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 || ||||| | || ||||| || ||||| |||||||| | ||||| |||| ||| || Sbjct 836 ACTAAATGCAATGTAGATTCCTTCTGAATATTATAATCGGACAATG-TGCGTCCATCCTC 894 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | ||||||||||| | ||||| | ||| ||||| || || || || ||||| ||||| Sbjct 895 TAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCTTTATCTTG 954 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 |||||| | ||| ||| |||| | || |||||| | || || || | ||| || |||| Sbjct 955 -AATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAAGTGATGGTTT 1013 Query 29756 TGCCAGTTAA 29765 | || || || Sbjct 1014 TTCCCGTCAA 1023 >seq21876 Length=2391 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| |||||||||||||| ||||| || |||||||| ||||| | | ||| || Sbjct 727 ACGCAGGACCAAATGAAGCGTTGATTCCTTCTGAATGTTGTAATCGGACAAGGTACGGCC 668 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| ||||| || | || || | |||||||| || ||||| ||||| || Sbjct 667 ATCTTCCAATTGCTTGCCGGCGAAGATTAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 608 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || |||| | |||||||| | || ||||| || || || Sbjct 607 GTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCAGACGGCTCAACTTCCAGGGTGAT 548 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || ||||| || || || ||||| Sbjct 547 AGTCTTGCCAGTCAAAGTTTTTACGAAGATTTGCAT 512 >seq119770 Length=1537 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||| ||||| || |||||||||||||| || || || | | || || Sbjct 877 ACGCAATACCAGGTGAAGTGTTGATTCTTTTTGAATATTGTAGTCGGATAGAGTACGTCC 936 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || || | || | | ||| ||||| || |||||||| ||||| Sbjct 937 ATCTTCTAATTGTTTTCCGGCGAAAATAAGACGTTGTTGATCTGGTGGAATACCTTCTTT 996 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | ||||||| |||| | |||||||| | || || || | || | Sbjct 997 ATCCTG-AATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCTAAGGTGA 1055 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || |||||||||| ||||| || || || |||||||| Sbjct 1056 TGGTCTTGCCAGTTAGTGTTTTGACGAAAATTTGCATTTT 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384566398635486