Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq2788 659 0.0 >seq2788 Length=136445 Score = 659 bits (730), Expect = 0.0 Identities = 797/1078 (74%), Gaps = 25/1078 (2%) Strand=Plus/Minus Query 71290 AAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTAT 71349 |||||||| ||| || || ||||||||| | ||||||||||||||||| | || | Sbjct 17862 AAAAACGACCAGCTGCTCGAGCCGATGTTCTTCGGTCAGTCGGTTAACGTGGCGCGCTTC 17803 Query 71350 GATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGG 71409 || |||||||| || |||||||| ||||| || || || || || ||||||||| Sbjct 17802 GACCAGCAGAAATATGAAATCTTCGAAAAACTGATCGAAAAGCAGCTGTCCTTCTTCTGG 17743 Query 71410 CGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCAT 71469 || || ||||| || || ||| | | |||||||||||||||||||| |||| || ||| Sbjct 17742 CGTCCGGAAGAAGTTGACGTTGCCCGTGACCGTATCGACTTCCAGGGTCTGCCGGAGCAT 17683 Query 71470 GAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGT 71529 ||||||||||| ||| | |||||||| || || || |||||||||||||||||||| Sbjct 17682 GAAAAACACATTTTCCTGAGCAACCTGAAGTATCAGACGCTGCTGGACTCGATTCAGGGC 17623 Query 71530 CGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCT--ATCCCGGAACTCGAAACCTGGA 71587 |||||||| |||||||| | |||||| ||| ||| || || || || || |||||| Sbjct 17622 CGTAGCCCTAACGTGGCGCTACTGCCG--CTGATCTCCATTCCAGAGCTTGAGACCTGGG 17565 Query 71588 TTGAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCATACACCCACATCATCCGTA 71647 |||| |||||||||||||| || || || ||||| ||||| ||||| || || || |||| Sbjct 17564 TTGAGACCTGGGCGTTCTCCGAGACTATCCACTCACGCTCGTACACGCATATTATTCGTA 17505 Query 71648 ATATCTTTACTGACCCCTCCATCGTGTTTGATGACATCGTGACCAACGAACACATCAAAG 71707 ||||| | | || || || | |||||||| || ||||| ||||||||| | ||| Sbjct 17504 ATATCGTCAACGATCCGTCACTGGTGTTTGACGATATCGTCACCAACGAAGAGATCCTCA 17445 Query 71708 CGCGTGCTGAGTCCGTCACGGAGTATTACGACCAGCTGATCGAAATGACCATGTACCTCA 71767 |||||| || | || | | || |||||| ||||||||| ||||||| ||| Sbjct 17444 AGCGTGCGAAGGACATCTCTGGTTACTACGACTCGCTGATCGAGATGACCAGCTACTATC 17385 Query 71768 ACTTACTGGGTGAAGGTACTCATGTAATCAATGGTAAGAAAGTCGTGGTCTCGATG--CG 71825 || | |||||||||||||| ||| ||||||| || | || ||||| || || Sbjct 17384 ACCTGCTGGGTGAAGGTACGCATCAGGTCAATGGCAAAACGGTTGTGGTGAACCTGCACG 17325 Query 71826 TGCT-ATCAAGCGTCTGGTCTACCTGTGCATCGTGTCGGTCAACGTGTTGGAAGCCATCC 71884 ||| | ||| | |||| |||||| | || ||||| | | |||||||| | | Sbjct 17324 AGCTGAAGAAGAAAC---TCTATCTGTGCCTGATGAGCGTCAATGCGCTGGAAGCCGTGC 17268 Query 71885 GCTTCTATGTCTCGTTTGCCTGCTCGTTTGCCTTTGCTGAACGCGAGCTGATGGAAGGCA 71944 | ||||| ||| || ||||| || |||||||| || |||||||||||||||||||| | Sbjct 17267 GTTTCTACGTCAGCTTCGCCTGTTCATTTGCCTTCGCAGAACGCGAGCTGATGGAAGGTA 17208 Query 71945 ACGCCAAGATCATTAAACTGATCGCCCGTGATGAAGCCCTGCATCTGACCGGCACCCAGC 72004 | || || ||||| || || |||||||| || ||||| || || |||||||| || |||| Sbjct 17207 ATGCAAAAATCATCAAGCTTATCGCCCGCGACGAAGCGCTCCACCTGACCGGGACTCAGC 17148 Query 72005 ACATGATCATGTTAATGAAGTCCGGTGCTGACGATGCTGAGATGGCGGAAATCGTTAAAG 72064 || | | | | || |||||||| || || | || ||||| |||| |||| Sbjct 17147 ACGCGCTGAACCTGCTGCGCTCCGGTGCCGATGACCCGGAAATGGCCATCATCGCCAAAG 17088 Query 72065 AGTGTGAAGCAGAAACATACGCACTCTTTAAGGACGCTGCAGAGCAGGAGAAAGACTGGG 72124 |||| || ||| || | || || | || |||||||| ||||||||||||| Sbjct 17087 AGTGCGAGAAAGAGTGTTATGACCTGTTCGTGCTGGCCGCAGAGCAAGAGAAAGACTGGG 17028 Query 72125 CGAACTATCTATTCCAGGACGGGTCGATGATCGGTCTGAACAAAGAGATCGTGTGCCAGT 72184 | | ||||| |||| ||||| ||||||||||| ||||||||||| || | ||||||| Sbjct 17027 CAGAATATCTTTTCCGCGACGGCTCGATGATCGGCCTGAACAAAGACATTCTTTGCCAGT 16968 Query 72185 ACATCGAATACATCACCAACATCCGTATTCGCGCCATCGGTTACGATGACATCTACGCCG 72244 |||||||||||||||||||||||||||| | ||| | ||| ||| || | ||| Sbjct 16967 ACATCGAATACATCACCAACATCCGTATGCAGGCCGTGGGT----CTGA---CTGCACCG 16915 Query 72245 GTGTCAAAGCT------AACCCAATCCCATGGATCAACTCCTGGTTGGTTTCTGACAACG 72298 |||| || ||||| ||||||||||||||| | ||| |||| |||||||||| Sbjct 16914 --TTCAAGACTCGCTCAAACCCGATCCCATGGATCAACGCGTGGCTGGTGTCTGACAACG 16857 Query 72299 TGCAAGTCGCTCCACAGGAAGTGGAAGTAAGTTCTTATCTGGTCGGTCAGATAGACTC 72356 | || || || || |||||||| ||||| || ||||||||||| |||||||| || || Sbjct 16856 TACAGGTTGCGCCGCAGGAAGTTGAAGTGAGCTCTTATCTGGTGGGTCAGATCGATTC 16799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 865833296639040