Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq2788 205 1e-47 seq6040 93.3 5e-14 seq23398 84.2 2e-11 >seq2788 Length=136445 Score = 205 bits (226), Expect = 1e-47 Identities = 339/487 (70%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 145894 GAACAGAGTGATGTAATCGTCTTTAATCAGACGTTCAAACATCAGGTCGTTGATTTGAAC 145953 |||||||||||||| || |||||| |||||| | | ||||||| | |||||| || || Sbjct 19225 GAACAGAGTGATGTCGCCGCCTTTAACCAGACGCTGATACATCAGTTTGTTGATCTGCAC 19284 Query 145954 ACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTGAGTACGAG 146013 ||||| |||| |||||||| ||||| | || || || |||||| || || || || Sbjct 19285 GCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACGGTTGTTTTTCAGAACCAG 19344 Query 146014 GAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCGCCACCGCGAAC 146073 ||| |||||||||||| |||||| || || ||| ||| ||||| || || ||||| || Sbjct 19345 CAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGTCGCAGCACCGCCGCGCAC 19404 Query 146074 TCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAAGGAATAACTCC 146133 || || || ||||| || ||||| || || |||| ||| || |||| || ||| || Sbjct 19405 GCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTTATAGAACGGGATACAGCC 19464 Query 146134 AGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATCATACCTGCGTT 146193 ||||| |||| ||| || || ||| ||||| || || ||||| Sbjct 19465 GGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCAGCGCACGGATGCGGCCAGCGTT 19524 Query 146194 AATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCAGAT-TTGTTAA 146252 ||||||||||| || || | || | ||| | || | || | | || | ||| | Sbjct 19525 GATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA-TGGCGCTGGAGGTCGCGTTGA 19583 Query 146253 TTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGACGAGTAGGAG 146312 | || | ||| || || || || | |||||||| ||||| || ||||| || | Sbjct 19584 TGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTCGGGG 19643 Query 146313 TACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTTCTTAGTTGACACAGCATCGT 146372 | || | || | |||||| || |||||||||||||| || ||||| || ||||| | Sbjct 19644 TGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAATCTTGAAGGTTGAAACCGCATCAT 19703 Query 146373 AAAAACG 146379 | ||||| Sbjct 19704 AGAAACG 19710 >seq6040 Length=129903 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 74605 AATTTGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCT 74664 ||||||||| |||| | ||||| ||||| | ||| ||||||||||||||||||||||| Sbjct 118356 AATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCTCT 118297 Query 74665 AACCAATTGAGCTATAGGGCC 74685 |||||| ||||||| ||||| Sbjct 118296 AACCAACTGAGCTAAGGGGCC 118276 >seq23398 Length=53367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 76455 TGGCTGGGGTACCTGGACTCGAACCAGGGAATCGTAGAATCAAAATCTACTGCCTTACCA 76514 ||||||||||||||||| |||||||||||||| | | ||||||| | | ||||||||| Sbjct 13705 TGGCTGGGGTACCTGGATTCGAACCAGGGAATGCTGGTATCAAAAACCAGTGCCTTACC- 13763 Query 76515 ACTTGGCTATACCCCA 76530 |||||| |||||||| Sbjct 13764 GCTTGGCGATACCCCA 13779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553391689085760