Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq2788 165 1e-35 seq38357 98.7 2e-15 >seq2788 Length=136445 Score = 165 bits (182), Expect = 1e-35 Identities = 336/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Minus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 ||||| |||| ||||| || ||| |||| | || || || |||||| | ||||| Sbjct 19707 TTCTATGATGCGGTTTCAACCTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGGCGTG 19648 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 || |||||||| |||||||| || || || || ||| || | |||||| || | Sbjct 19647 CGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCTGGAC 19588 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGT 78807 || ||||| | | | | || || | ||| || |||| ||||||||||| Sbjct 19587 TCCATCAACGCGACCTCCAGCGCCATCGTGAAATACGTTTCACAGCGCGCAGGTATCGGC 19528 Query 78808 GTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCG-TTCGTTCAGGTGAG--ATTCGT 78864 | |||| || || ||||| | ||| || |||| ||||| |||| Sbjct 19527 ATCAACGCTGGCCGCATCCGTGC-GCTGGGTAGCCCGATTCGCGGCGGTGAAGCATTC-- 19471 Query 78865 CACACTGG-TGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCA 78923 || || || |||| | || |||| || ||||| || || ||||||||||| || ||||| Sbjct 19470 CATACCGGCTGTA-TCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTCTCA 19412 Query 78924 AGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGA 78983 || || || || || ||||||||||| || |||||||| |||||| | |||||||| Sbjct 19411 GGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGTTGA 19352 Query 78984 AAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGA 79043 || ||| | |||||||| |||||| |||||||||| ||||| ||||||| | || Sbjct 19351 AAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACATGGA 19292 Query 79044 CTACAGTGTATCAATCAGTCGATTGATGCTTGAGCGTCTTGTGAATAACGATTACATCAC 79103 |||| | || |||| | ||||| | ||||||| || || || ||||||| Sbjct 19291 CTACGGCGTGCAGATCAACAAACTGATGTATCAGCGTCTGGTTAAAGGCGGCGACATCAC 19232 Query 79104 GCTATTCAGTCC 79115 || ||||| || Sbjct 19231 TCTGTTCAGCCC 19220 >seq38357 Length=36386 Score = 98.7 bits (108), Expect = 2e-15 Identities = 233/352 (66%), Gaps = 0/352 (0%) Strand=Plus/Plus Query 187375 CGATGCATTCCAGACGTTTGAATATCAAGTCAATACGATGCAGACTTCAAACGGTCAGAC 187434 ||| || || ||| || | |||||| | || |||||| | || || | ||||| ||||| Sbjct 27581 CGACGCCTTTCAGTCGCTGGAATATGAGGTTAATACGCTTCACACCGCCAACGGCCAGAC 27640 Query 187435 ACCATTCACGACAATCAACTTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAA 187494 || || ||| | ||| || | ||||| | ||| ||| || |||||||| Sbjct 27641 GCCGTTTGTGACCTTTGGCTTTGGTCTGGGTACCTGTTGGCAAGCGCGGCTGATTCAAAA 27700 Query 187495 AAGTATTCTTCAGAATCGTATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCC 187554 | ||||| | || ||||| || || |||| || | | ||||| || | || || Sbjct 27701 ATCGATTCTGCGCAACCGTATCGCCGGATTAGGAAAAAATCGTAAAACGGCCGTGTTTCC 27760 Query 187555 TAAGCTTGTTTTCACATTGAGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGC 187614 || || |||||| | | | |||||| | || | || | | |||| | || | Sbjct 27761 CAAACTGGTTTTCGCCATTCGCGACGGCATAAATCATAAGGCGGCCGACGCCAATTATGA 27820 Query 187615 CATCAAAAAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTA 187674 ||||||| || | || || |||||||| || ||||||||||| || || ||| | || || Sbjct 27821 CATCAAACAGCTCGCCCTCGAATGTGCCAGCAAGCGTATGTATCCCGATATTCTTAATTA 27880 Query 187675 TGACAAACTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGC 187726 || | | ||| | || ||| |||||| | || |||||||| ||| Sbjct 27881 CGATCAGGTGGTTAAGGTCACCGGTTCGTTTAAAACCCCGATGGGCTGCCGC 27932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 187030 CGGCGATATTCATTTTCATGACCTTGACTACAGCCCATTATTCCCGCAATTCAACTGTAT 187089 |||||| ||||||| ||| || || |||||| || || |||||| |||||||| || Sbjct 27207 CGGCGAAATTCATTATCACGATCTCGACTACTCACCGTTTTTCCCGATGTTCAACTGCAT 27266 Query 187090 GCTTATTGATATCAAAGGCATGTTTGAAGGCGGTTTCAAAATGGGTAATGCTGAAATCGA 187149 ||| || || ||||||||||||| | ||||| |||||||| || || |||||||| Sbjct 27267 GCTCATCGACCTCAAAGGCATGTTGAATAAAGGTTTTAAAATGGGCAACGCGGAAATCGA 27326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788783448219840