Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq139038 156 1e-33 >seq139038 Length=11747 Score = 156 bits (172), Expect = 1e-33 Identities = 673/1059 (64%), Gaps = 49/1059 (5%) Strand=Plus/Minus Query 30279 CCGGCGCGGAACGTATCAAGCGCGGTTTCTTCACCAGCCAGCCACGCAAGCCCACGGCCT 30338 ||||| ||||| || || ||| | | |||||||| || ||||| || | |||||| || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 30339 TCGACGTTAGAGTAATCCGCAACAACAAACTTACGCCCGGCTTCCGGG---ATAATGCAG 30395 || ||||||| ||| || |||||||| | ||| | ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCATC---GCTTCCGCTGCAATAATACAA 7862 Query 30396 CTTCGGACGGTAGACGCTGTTAGCTTGGCCACATCAAAACGGCGGTGTGCACGGCCTTTA 30455 |||||| || || || ||||||||||| | ||| | | | | || ||| | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 30456 AGTAACGCGGCAATACCC----------CTATCCAGTT----CA-------------TCG 30488 |||| | |||| | || | | || || ||| Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 30489 TCGTGATAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAAT 30548 ||||| |||||||| || || || || ||||| ||||| ||| ||| ||||| | | Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 30549 GTTCGCTTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCT 30608 |||||||| || || || ||||| || ||||| ||||| ||| | || | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 30609 AACAGCAACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATA 30668 | | ||| |||||| |||||||| || || || || ||||| ||||| || || Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 30669 ATAGTGCGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTC 30728 ||| |||||| ||||| || | ||| ||| | |||| || | | |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTC 7502 Query 30729 TGTGCGTTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTG 30788 || || || | | | ||||||||| || || | | || |||| ||| || Sbjct 7501 TGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCA 7442 Query 30789 CCGGTTAGTGAACC---GCCGTATTTGCGTTGGGCTTCTTCCTGTAGCTCTTCCTTGTGG 30845 ||||| || ||| |||||||||| || || | | || |||| ||| || Sbjct 7441 CCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGC 7385 Query 30846 CGCGTCACTGCTTCAATTGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCG 30905 | | || | | ||| ||| || | || || | ||| || ||||| Sbjct 7384 TCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCA 7325 Query 30906 TTAATTACTTGGTCTAACCAC-AGCACGCGGTCTTCGAACTCAG---AATTCCCCCACTT 30961 ||||| | ||||| || ||| | | |||| ||| | ||| | | |||| | | Sbjct 7324 TTAATGATCTGGTC-AAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCC---ATGT 7269 Query 30962 CGGCATTTTCTTATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCGATAAA 31021 |||| | | | | ||||||||||| || || |||| |||||| | | ||| Sbjct 7268 TGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAA 7209 Query 31022 TTCTGCCCACTCTTTTGGGTGGGTATCGGCGGTATATCGTCGAATCTTATAGTTCTTAGG 31081 | ||| |||| ||||| || | || || || || ||||| || |||||||| Sbjct 7208 GCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGG 7149 Query 31082 CGTAGGCTTACTGAACCGCTGTATGAGCGCCTTACCGCGTTTATCCTTAGCCATGCT-TG 31140 ||| || |||| ||| ||||| || | ||||||||| ||||| || || | ||| Sbjct 7148 CGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGA-GCTCCA 7090 Query 31141 CGTCAATGTTTAAAACCTCACACAGCGTGGCCAGTGAACCCGGGAGGGCGTGTCGGAACG 31200 || || ||||| || || || || | | || |||||||| | |||| |||| | | Sbjct 7089 CGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGG 7030 Query 31201 CTACTATCATAGTGTCTATAATGTTTTCTACCAGGAGTTCGAACCCCCAGCAATGCTTAA 31260 | | | ||| ||||| || |||| || ||| ||| ||||| || | | | Sbjct 7029 CCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCCCAACAGTTCGACA 6970 Query 31261 TAACTGGTCGGTCGAACATAAGGAAGTTTTGGCCTACCA 31299 || |||| ||||||||| | |||||||||||| |||| Sbjct 6969 GCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Score = 156 bits (172), Expect = 1e-33 Identities = 381/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Minus Query 25498 TGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAGTGCTCC 25557 ||||| ||||| | || || || || ||||| || ||||| | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 25558 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGCCCGCCGTCCTGTAAATTCAAACC 25616 | |||||| | | | | ||||| ||||||| || |||||||| || || || | || Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 25617 ATGGCCCGCCGATG-CAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCAAGATT 25675 || |||| || || | ||||| | | | || ||| | ||| ||||||| | Sbjct 10655 GTG-CCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCT 10597 Query 25676 CCATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCGCCTA 25734 | || | || || | || |||||| | | ||| |||| ||||||| | | Sbjct 10596 CGATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTC 10538 Query 25735 AGAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCACCCTGCAAC 25794 || ||||| || | || || | | ||||||||| | ||| |||||||| | | | Sbjct 10537 AGGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGC 10478 Query 25795 TCCTCGACAATGGACTCTAACGCATCGAGTTTCGCGTCGTGCACTTTCTCCCAGTCTTTC 25854 || || ||| ||||| | ||| || || ||| ||| || | ||||||||| Sbjct 10477 TCTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCT 10418 Query 25855 GTTGCTTCACCATCCGGCCCCGACACATACACGGCACCGGAAGCAATCTGCAAGCACTTA 25914 || | ||||| || | | | |||||| |||||||||||||| ||||||||||| ||| Sbjct 10417 GTCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTA 10358 Query 25915 GCCGTTTTAGCGGCGGCGTTAGCCGCTTCAACTTCTCCGCTC-TCCAGTTCCGCGAATAA 25973 ||||| || || || || ||| | || || |||| ||| ||| || || || || | Sbjct 10357 GCCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCAG 10299 Query 25974 CTTCTCCTCCATATCGATGTAGGCTTGACGCGCTTTCTTCGGCAGGTCAATCTCAACCGG 26033 | || | |||||||| ||| ||| ||||||| ||||||| | | | ||| Sbjct 10298 CAGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGG 10239 Query 26034 TACAATAACCGGTGCTTCACAACCGAA 26060 || | || || ||||||||||||| Sbjct 10238 AACTACAATCGCCTCTTCACAACCGAA 10212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134353791977860