Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq2788 138 2e-27 >seq2788 Length=136445 Score = 138 bits (152), Expect = 2e-27 Identities = 284/415 (68%), Gaps = 12/415 (3%) Strand=Plus/Plus Query 32808 CATTTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTT 32867 || ||| ||||| || | |||||||||| ||| | | || || |||| ||||| Sbjct 19267 CAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACACCACG 19326 Query 32868 GTTGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGT 32927 |||||| || || || || | |||||||||| || ||||||||||| || |||| || Sbjct 19327 GTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACAGGGT 19386 Query 32928 AGCAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTT 32987 ||||| || || || || |||||||| |||||| ||| ||||| ||||| |||| || Sbjct 19387 CGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGTGCTT 19446 Query 32988 CCAGAATGGGATAATACCAGTATGACGAA--CCTCGCCAGAACGAATTCTAG--AGCCTT 33043 |||| |||||| || ||||| ||| | || || |||| || | | || Sbjct 19447 ATAGAACGGGATACAGCCGGTATG--GAATGCTTCACCGCCGCGAA-TCGGGCTACCCAG 19503 Query 33044 CAGCACGAATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAAC 33101 | ||||| || ||| | ||||| |||||||| || | || ||| | || | || Sbjct 19504 C-GCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGCGCT--GTGAAACGTATTTCAC 19560 Query 33102 GATAGAACTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCA 33161 ||| | || | ||| ||||| ||| || || || || | || ||| ||||| Sbjct 19561 GATGGCGCTGGAGGTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCA 19620 Query 33162 TGAGCTAAACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAGA 33216 ||||| ||||| || ||||| || || || || | || ||| || || || ||| Sbjct 19621 AGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGA 19675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709056660622560