Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq1819 163 3e-35 >seq1819 Length=65085 Score = 163 bits (180), Expect = 3e-35 Identities = 466/707 (66%), Gaps = 27/707 (4%) Strand=Plus/Plus Query 26012 AAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAACA 26071 || ||||||||||| || || || || || | || || | ||||| || | ||||| | Sbjct 3570 AAGGCAATCTCTTCAAGACAGGCCACTTTAAAGCCCTGGCGTTTCTCAATGGTATGAATA 3629 Query 26072 AATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCTT 26131 |||||||| ||||| | || || || |||||||||||||| | ||| | ||||| | Sbjct 3630 AATTGAGAAGCTTCGAGCAGGCTGTCGTGTGTTCCTGTATCTAACCAGGCAAAACCGCGA 3689 Query 26132 CCTAGTT-TACAGACACGTAAAGTCTTTT--CTTTCCAGTACATCTCATTTATATCCGTA 26188 || | || | || || | || | ||||| ||||||||| || | || Sbjct 3690 CCCAATTGTTCA---ACTTTCAGGTTACCAGCTTTCAGGTACATCTCGTTCAGCGTGGTG 3746 Query 26189 ATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAATTA 26248 || || | ||| |||| ||||| || | ||| || | | | ||| || | Sbjct 3747 ATTTCAAGCTCACCTCGGTGCGAAGGCTTGATTTGCTTTGCCATTTCAACAACGTGATGA 3806 Query 26249 TCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTTCA 26308 ||||| || || | || || | || | || || | || ||||||||| Sbjct 3807 TCGTAGAAATAAAGACCGGTTACCGCCCAATTTGAACGAGGCTCAGTCGGCTTTTCTTCA 3866 Query 26309 AT--ACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCAT 26366 || | | | | | | || | |||||||| || || ||||| | || ||||| Sbjct 3867 ATGGAAATAGCGCGATTCTTTTCG--TCAAACTCTACGACGCCAAAACGCTCTGGATCCA 3924 Query 26367 TTACGTGATACCCAAAGATATTAGCTCCACCATTCTTT-TCAATATGTTCTTTAGCAGAA 26425 |||| ||||| ||||||| |||| ||| || | || ||| || || || Sbjct 3925 TTACCTGATAGCCAAAGACGGTAGCGCCATCAATATTGCTCACCGCGTGCTCAAG----- 3979 Query 26426 TCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACA 26485 | || | ||| || || | ||| ||||| | |||||||| || || ||||| ||| Sbjct 3980 TTTA-----CGACCGAAGCTTTCACCGAAGAAAATGTTATCACCAAGGACCAGTGC-ACA 4033 Query 26486 GAATCTTCACC---AATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGG 26542 | | ||||| |||||| | ||| || |||||||| || | |||||||| | ||| Sbjct 4034 GCTT--TCACCGGCAATAAAATCCTCGCCGATAATAAAGGCCTGGGCTAAACCATCCGGG 4091 Query 26543 CTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTT 26602 || ||| || ||||| || || ||||||||||| ||||| ||||| | |||| Sbjct 4092 CTTGGCTGAATAGCATATTGCAGTGAAATACCAAATTGGGAACCGTCACCCAAAAGACGA 4151 Query 26603 ACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGC 26662 ||||| | | |||||| ||||| ||||| || || || || |||| |||| | | Sbjct 4152 ACAAATGCATCATTATCTTCGGGTGTGGTAATAATAAGAATGTCTTTAATACCAGCCAAC 4211 Query 26663 ATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGG 26709 || | ||||||| |||||||| ||||| |||||||| ||||| || Sbjct 4212 ATCAAAACAGAGATCGGATAATAGATCATCGGTTTATCATAAATAGG 4258 Score = 125 bits (138), Expect = 7e-24 Identities = 197/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 25502 TAATATTCTGTACATTTGTATTCAAAATCAGCAATATCACTAATCACAACAAAGCCATGA 25561 ||||| | || ||||| |||||||||||||||| |||| | ||| |||||||| || Sbjct 3050 TAATAATTGGTGCATTTATATTCAAAATCAGCAACATCAGACAGCACCACAAAGCCGTGT 3109 Query 25562 GCGAAACCAGGAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGAACACCTACC 25621 || ||||| || || | ||||||||| || || |||| ||| || | || || || | Sbjct 3110 GCCAAACCCGGTGGTACCCAAAATTGGGTCTTGTTCTCTTCGGAAAGCAGTACGCCGTAC 3169 Query 25622 CATTCTCCAAATGTTG--GACTACCAACCCTAATATCTACAGCAACATCATAAACTTCAC 25679 || | || | | | |||| || | ||| || || || || ||||| ||||||| Sbjct 3170 CACTTGCCGTAGGAAGCAGACT--CAGGGCGAATGTCGACGGCCACGTCATAGACTTCAC 3227 Query 25680 CACGAACACAGCGTACCAACTTCCCTTGTGGGTTTTTCTTTTGAAAATGAAGCCCACGTA 25739 ||||||| ||| |||| || ||||| || || | |||||||| | || || | Sbjct 3228 CACGAACTACGCGCACCAGTTTGCCTTGAGGATTAGCAGTCTGAAAATGCATGCCGCGCA 3287 Query 25740 GAACTCCTCGGATAGAACGTGAATGGTTATCTTGGACAAA 25779 || || | |||||||||||||||| || || ||||| Sbjct 3288 AGACGCCCTTGCTAGAACGTGAATGGTTGTCCTGAACAAA 3327 Score = 93.3 bits (102), Expect = 4e-14 Identities = 243/371 (65%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 27058 CCAATATTATATGTCTCTCCAGATTTGCCTTTAGTTACTACTAGGTGTAATGCCTCTGCG 27117 || ||||| || || || || || |||| ||| || || ||| | ||| ||| Sbjct 4666 CCGATATTGTAGGTTTCGCCGACTTCACCTTCAGTCACAACCTTGTGCAGTGCACGGGCG 4725 Query 27118 TGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATTGGT 27177 ||||| ||||| || |||||||| | | ||| || || ||||| || || | ||| Sbjct 4726 TGATCTTCAACATACAACCAGTCACGAATCTGATCGCCTTTGCCATAGACCGGCAGAGGT 4785 Query 27178 TTATGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATATGCT 27237 ||| | | | ||| || | || || ||||| || || |||||| | Sbjct 4786 TTACCCGCCAGGGCATTCAGGATGATCAACGGAATCAGTTTCTCAGGGAAATGATAAGGG 4845 Query 27238 CCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCACGCT 27297 ||| | || || ||||| || || | | || || | || || || || | ||| ||| Sbjct 4846 CCATAGTTGTTAGAACAGTTCGTCACCAGGGTAGGCAGGCCGTAGGTGCGTTTCCATGCT 4905 Query 27298 CTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAAGGA 27357 || |||||||| || || || || || || |||| ||| || ||||| || ||| || Sbjct 4906 CTCACCAAATGGTCACTGGCGGCCTTGGACGCAGAATAAGGGCTACTAGGGGAATAGGGG 4965 Query 27358 TTCTGTTCTGTAAACGGATAATCTCCTTCTTCCAGATCACCATACACTTCATCTGTTGAA 27417 | | ||| || || | | || | | | | ||||||||||||||| || || ||| Sbjct 4966 GTTTCTTCGGTGAATAGGTCGTCCACGCCGTGTAAATCACCATACACTTCGTCGGTGGAA 5025 Query 27418 ATATGATGGAA 27428 ||||| ||||| Sbjct 5026 ATATGGTGGAA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474604066307520