Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq2788 251 7e-62 >seq2788 Length=136445 Score = 251 bits (278), Expect = 7e-62 Identities = 314/425 (74%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 121985 GATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTACGA 122044 ||| |||||||| || | ||||| || | ||| || || || || || |||||||| Sbjct 17467 GATATCGTCAAACACCAGTGACGGATCGTTGACGATATTACGAATAATATGCGTGTACGA 17526 Query 122045 ACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGG-TGGTGT 122103 || ||||| |||||||| ||||||||| ||||| ||||| || || || ||| | Sbjct 17527 GCGTGAGTGGATAGTCTCGGAGAACGCCCAGGTCTCAACCCAGGTCTCAAGCTCTGGAAT 17586 Query 122104 CGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAGGA 122163 ||| | | |||||| || | |||| |||| ||||||||| | |||||||| || Sbjct 17587 -GGAGATCAGCGGCAGTAGCGCCACGTTAGGGCTACGGCCCTGAATCGAGTCCAGCAGCG 17645 Query 122164 TCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCATGTAGT 122223 ||||||||||||||||||| | ||| ||||| || || || ||||| ||| | | ||| Sbjct 17646 TCTGATACTTCAGGTTGCTCAGGAAAATGTGTTTTTCATGCTCCGGCAGACCCTGGAAGT 17705 Query 122224 CAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTTTT 122283 | || |||||||||| |||| || |||||||||||||||||||| | ||| ||||||| Sbjct 17706 CGATACGGTCACGGGCAACGTCAACTTCTTCCGGACGCCAGAAGAAGGACAGCTGCTTTT 17765 Query 122284 CGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCGTCT 122343 ||||||| |||||||| | | | ||| |||||||| | || | ||||| || || Sbjct 17766 CGATCAGTTTTTCGAAGATTTCATATTTCTGCTGGTCGAAGCGCGCCACGTTAACCGACT 17825 Query 122344 CACCGAGGAACATCGGCT-GAGTCAGAAAGTCGAACTTGTTCTGGTTAAACGTGCTGTAA 122402 ||||| ||||||||||| ||| ||| |||| ||||| || ||| ||| | || Sbjct 17826 GACCGAAGAACATCGGCTCGAG-CAGCTGGTCGTTTTTGTTTTGTGAAAAGGTGGTATAT 17884 Query 122403 GACAT 122407 | ||| Sbjct 17885 GCCAT 17889 Score = 192 bits (212), Expect = 6e-44 Identities = 950/1488 (64%), Gaps = 122/1488 (8%) Strand=Plus/Plus Query 123187 CTTCGCCAAGTAATACGCCAGGTTGGTCCAGCCAATACCCAGCGTTCGACGATCCTTAGT 123246 ||| |||| ||||| || |||| | ||||||||||||||| || || || | | Sbjct 18681 CTTGGCCAGATAATAAGCATAGTTGATAACGCCAATACCCAGCGTACGGCGGCCCATTGC 18740 Query 123247 --CTTCTCT-GCCGCCAGTACCGGGTAGTTCTGGTAGTCCAACAGACGGTCAAGTGAGCG 123303 | | | || ||||| | ||||| | ||| || || | ||| |||||| | || Sbjct 18741 GCCGCGTTTAGCGGCCAGGATTGGGTAATCCTGATAATCGAGCAGGGCGTCAAGCGCACG 18800 Query 123304 CAC--CAAGGTGCGTACCGGGCCACGGAGGTCTTCCAGACTCTCTACCTTGCCGAGGTTG 123361 ||| ||||| || || | | ||| || ||||| || || | |||||||||| Sbjct 18801 CACTGCAAGGGTCG--CCAGCTCTTCGAGATCATCCAGGCTTTCGATAGCGCCGAGGTTG 18858 Query 123362 ATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTC--------------AGGAT 123407 | ||||||||||||||||| || || || || || || || | | Sbjct 18859 AAGGCAGACAGCGTACAAAGCGCGATTTCCCCTTCTTCGTCGTTCACGTCATTTAACGGC 18918 Query 123408 TTTTGAGG--------------TCATTGATCGCGTGAGTAGGCAGGGCAATCTCCATGCA 123453 ||||| || ||||| | || | || ||||| || || || | ||| Sbjct 18919 TTTTGTGGGCGCGCGGTTTCANTCATTTAACGGCTTGGTTGGCAGCGCGATTTCAAGGCA 18978 Query 123454 CAGGTTGGACTGTTTCACCGGGGCCAGTTCTGGATTGAACGGGCTGTTGGTGTTGCAGTG 123513 |||||||||||| ||||| || | | || | |||||||| | |||||||||||| Sbjct 18979 CAGGTTGGACTGGCGAACCGGTGCAATAGCGGGGTCAAACGGGCTATGGGTGTTGCAGTG 19038 Query 123514 GTCAACGTGCTGAATGTAGATGCGTCCTGTCTGAC-TGCGCTCCTGCATAGCCACGGAGA 123572 ||||||||||||||| ||||| || || || |||| ||| |||||||| || ||||| Sbjct 19039 GTCAACGTGCTGAATATAGATACGGCCGGT-TGACGCGCGTTCCTGCATCATCAGGGAGA 19097 Query 123573 A---------GGCTT----CTGCTGC--GGAGATGCTTTTCTTAGCCACTTCCGGATCGG 123617 | ||||| || |||| | ||||||| | ||| | ||| Sbjct 19098 ACAGCTCAACGGCTTTCACCTTCTGCTTGCGAATGCTTT---------CGTCCTGCTCGT 19148 Query 123618 CTTCCAACTTCTCGTACA-ACTCTTCAAATTTCTTCTGGTCGGAGAAGAAATACTCGTAC 123676 || | | ||||| || | || || | | ||| |||| |||||| |||||| Sbjct 19149 ATT--GAGT----GTACAGACGC-TCGAACTCGTCCTGATCGGCGAAGAACGCGTCGTAC 19201 Query 123677 AGCTTGCCACCTGCAACGT---TCGGGTGGAACAGAGTGATATTTCGCCCATGTTGCAGA 123733 || |||| | |||| |||| |||||||||||| | | || | |||| Sbjct 19202 AG---GCCA---GGCACGTCAGACGGGCTGAACAGAGTGATGTCGCCGCCTTTAACCAGA 19255 Query 123734 CGTGCATACAGCATTTTGTTGATTTGCAGGCCGTAGTCAACGTGACGAGCACGGGTGCTC 123793 || ||||| || ||||||||| |||| ||||||||| | ||||||| | ||| ||| Sbjct 19256 CGCTGATACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCT 19315 Query 123794 TCTGTGCCACGGTTGTTCTTCATCACGATCAGGTTTTCGAAATCCCAGTGCCACATAGGG 123853 || ||||||||||| |||| || | |||| |||| | ||| ||||||||| ||| Sbjct 19316 TCAACACCACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGG 19375 Query 123854 TAGAAGTAAGTTGCCGAAGCCTTACGTACACCACCCTGAGA--------TGTCCACC--C 123903 ||||| || || | | | || || || |||||||| | || || | Sbjct 19376 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTC 19435 Query 123904 CAGACCTTCTTGGTAAGAACGGACGATCGGCACAGTTCCTGCGTGTTTCACCTCTCCGCC 123963 || | ||| ||||||| ||| |||| || | || | || ||||| Sbjct 19436 TGGAAGTGCTT--ATAGAACGG--GAT----ACAG--CCGGTATGGAATGCTTCACCGCC 19485 Query 123964 ACGGATTGGTGCGTCCTGACCACGAATCATGCCAAAGTTAAGGCCGATCCCTGCTCGCTG 124023 || || || || | |||| || |||| ||| | |||||| ||||| ||||| Sbjct 19486 GCGAATCGGGCTACCCAGCGCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGCGCTG 19545 Query 124024 GGCAGCGTATTT-AC-CTTGCGCCGTCAGT-GCGTTGAAGATCTGGTCGATATCATCGCC 124080 | | ||||||| || | |||| | || ||||| ||| ||| | ||||| Sbjct 19546 TGAAACGTATTTCACGATGGCGCTGGAGGTCGCGTT---GATGGAGTCCAGGCTGTCGCC 19602 Query 124081 GGACTCGATCAATACGCAAGAACTGAACTGTCGTGTCGGAGTACGAACACCCGCCATGAT 124140 | ||||||||| ||||||||| |||||||| || ||||| || || || || | ||| || Sbjct 19603 GCACTCGATCAGTACGCAAGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAAT 19662 Query 124141 CGGTGTCGGCAGAGACACCTTCATCAGG--GACACGTTCTCGTACAGATCAACGATACGC 124198 || || |||||||| | ||| | ||| || || || || | | ||| Sbjct 19663 TGGCGTAGGCAGAGAAATCTTGA--AGGTTGAAACCGCATCATAGAAACGCTTGATGTAG 19720 Query 124199 TCCAGACGAGTGGC---CTTGTCCTCCTTGGACAGAAGGCCCATTGCAATCAGCATCAGC 124255 |||||||| || | | || | ||| | |||| | || | ||| || | Sbjct 19721 TCCAGACGCGTCTCACGCGGGTAGCC---GGAGAACAGGCACGCGGCGACCAGAATGTAC 19777 Query 124256 GCCATCTGTGGAGATTCGTAAATCTCGCCAGAGACACGGTTCTTGACCAGATACTTGTCT 124315 | ||| | ||| || || | ||| ||| ||||||| |||||||| ||| || Sbjct 19778 AAGAACTGGGCGCTTTCATAGATTTGGCCGCTGACGCGGTTCTGCACCAGATATTTGCCT 19837 Query 124316 TCGTACTGACGCATCGCTGCATAAGTGTAGTCGAAGTCACGATCGTGTACGATCTTGCCG 124375 || ||| | ||| ||||| | | ||| | |||||| ||| |||| | | Sbjct 19838 TCCAGCTGCTTAACCGCGGCATAGGAGAAGTTCATGTCACGCCAGTGATCGATAAAACTG 19897 Query 124376 TCGAGGAAGTCGATTTCGTCACGGCTGTAGTCTTCCAGCAGGTGACGGTCATACTT-CCC 124434 || | |||| || |||||| |||||||||||||||| || || || || ||| Sbjct 19898 TCCATCTGCTCGAACTCTTCACGGGTGTAGTCTTCCAGCAGATGTTTATCGTATTTGCCC 19957 Query 124435 ATTCCCAACATTCAGATAAATCTGCTCGAACAG-GCTGAATGGCTTGAAGTCACCATACG 124493 ||| | | |||| | | | ||| || ||||| || | || | ||| | || || | Sbjct 19958 ATTTCGACCATTTTGCT-GACCTGGTCAAACAGTGCAG-GCGGTTCGAACTGGCCGTAGG 20015 Query 124494 CCTCTTTTCGGATCTTGAACAGCAGCAGTCGTGCAGCGGCATACTGATAATCCG--GGTT 124551 | | ||| || | | ||| | ||| || || || ||||||||| || | | | Sbjct 20016 CTTTTTTACGCAGGTGGAAAATAGCCAGGCGCGCGGCCAGATACTGATAGTCAGGCGCGT 20075 Query 124552 CTGTACACTGATCAGGTCTGAAGCGGCTTTGATCAGGGTGTCATGAAT 124599 || || | ||||||||||| || |||||||| | ||| |||||||| Sbjct 20076 CTTTAGA--GATCAGGTCTGCGGCAGCTTTGATGATGGTTTCATGAAT 20121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485184045493440