Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq2788 107 2e-18 >seq2788 Length=136445 Score = 107 bits (118), Expect = 2e-18 Identities = 288/433 (67%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 31478 TCTTCCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGT 31537 ||| || || || || ||||||||||| || ||||| || ||||| ||||| ||||| || Sbjct 19675 TCTGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGT 19616 Query 31538 TCTTATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGA 31597 || ||| | ||| |||| ||||||| ||||| || || ||| || || | Sbjct 19615 ACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCGACCTCCAGCGCCATCGTGAA 19556 Query 31598 TTATGTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAG 31657 || || || | ||||| || ||||| | | | ||| || |||| | ||||| Sbjct 19555 ATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAG 19496 Query 31658 CCCTATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTC-ATAA--AATATCT 31714 ||| || || |||||| | || || ||| | || ||| |||| | | | Sbjct 19495 CCCGATTCGCGGCGGTGAAGCATTCCATACCGGCTGTATCCCGTTCTATAAGCACTTCCA 19436 Query 31715 GACTGGGGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGC-AACTTGCT 31773 ||| | || ||||| || |||||||| ||||| | || ||||| | || | | || | Sbjct 19435 GACGGCGG--TTAAA-TCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTT 19379 Query 31774 ATATCCCTATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTC 31833 || ||| || ||||| || |||| | |||| ||||| |||||||||||| Sbjct 19378 CTA-CCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTG 19320 Query 31834 TTGAAGAGAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAACCGCGTCATGTTCG 31893 |||||| ||||| | || | || ||||| || | ||||||||| | |||| Sbjct 19319 TTGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTATC 19260 Query 31894 AACGTCTGGTGAA 31906 | |||||||| || Sbjct 19259 AGCGTCTGGTTAA 19247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486896264347200