Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq2788 221 1e-52 >seq2788 Length=136445 Score = 221 bits (244), Expect = 1e-52 Identities = 324/455 (71%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 139708 ACATCAGATCGTTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGC 139767 ||||||| | |||||| ||||| ||||| |||| |||||||| |||||| ||||||| | Sbjct 19263 ACATCAGTTTGTTGATCTGCACGCCGTAGTCCATGTGACGAACGCGGTTGCCTTCAACAC 19322 Query 139768 CTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACA 139827 | ||||||||||||||| |||| | |||||||||||| |||||| || || ||| ||| Sbjct 19323 CACGGTTGTTTTTCAGAACCAGCAGGCTTTCAACTTCCAGGTGCCACATCGGGTAGAACA 19382 Query 139828 ACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGT 139887 ||||| ||||| || || || || || ||||| |||||||||||||| |||||||||| Sbjct 19383 GGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTAACCGCCGTCTGGAAGT 19442 Query 139888 GTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTT 139947 | || |||| || || ||| || || |||||||| | ||| || Sbjct 19443 GCTTATAGAACGGGATACAGCCGGTATGGAATGCTTCACCGCCGCGAATCGGGCTACCCA 19502 Query 139948 CAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAA 140007 || ||||| || || |||||||||||||| || || || | |||| ||| || || | Sbjct 19503 GCGCACGGATGCGGCCAGCGTTGATGCCGATACCTGCGCGCTGTGAAACGTATTTCACGA 19562 Query 140008 TCGATGCTGCTGAGT--CGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACA 140065 | | |||| | || ||||||| || || || | ||||||| | || || Sbjct 19563 T-GGCGCTGGAG-GTCGCGTTGATGGAGTCCAGGCTGTCGCCGCACTCGATCAGTACGCA 19620 Query 140066 CGAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAAC 140125 || ||||| || ||| |||| || || | || | |||||| || || |||| |||| Sbjct 19621 AGAGCTGAACTGGCGAGTCGGGGTGCGCACGCCGGACATAATTGGCGTAGGCAGAGAAA- 19679 Query 140126 GCGCTTTTGA-----GATACTGCATCATAGAAACG 140155 | |||| || || |||||||||||||| Sbjct 19680 ----TCTTGAAGGTTGAAACCGCATCATAGAAACG 19710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534193115744160