Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024122.1 Length=162910 Score E Sequences producing significant alignments: (Bits) Value seq2788 93.3 4e-14 seq6040 91.5 2e-13 >seq2788 Length=136445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 285/434 (66%), Gaps = 10/434 (2%) Strand=Plus/Minus Query 9396 TCTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGT 9455 ||| || || || |||||||||||||| ||||||||||| || |||||||||||||| || Sbjct 19675 TCTGCCTACGCCAATTATGTCCGGCGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGT 19616 Query 9456 ATTAATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGA 9515 | | ||| | || || | ||||||| || || || || | | ||||||| | Sbjct 19615 ACTGATCGAGTGCGGCGACAGCCTGGACTCCATCAACGCGACCTCCAGCGCCATCGTGAA 19556 Query 9516 TTATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAG 9575 || ||||| | || || || ||||| || | | ||| || |||| | ||||| Sbjct 19555 ATACGTTTCACAGCGCGCAGGTATCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAG 19496 Query 9576 CCCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTG-GTTCCATTCATCAAGTATTT-- 9632 ||| || || || ||| ||||||| || ||| | || ||| ||| | || Sbjct 19495 CCCGATTCGCGGCGGTGAAGCATTCCATACCGG-CTGTATCCCGTTCTATAAGCACTTCC 19437 Query 9633 -GACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGC-AACATGC 9690 ||| || | || || |||||||| ||||| | || || || | || | | || Sbjct 19436 AGAC---GGCGGTTAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGT 19380 Query 9691 TATGTTCCCATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGA 9750 | | || || ||||| || |||| | | ||||| |||||||||||||| Sbjct 19379 TCT-ACCCGATGTGGCACCTGGAAGTTGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGT 19321 Query 9751 TTGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAACCGCGTCATGTTC 9810 | |||| ||||| | || | || ||||| || | ||||| ||| | |||| Sbjct 19320 GTTGAAGGCAACCGCGTTCGTCACATGGACTACGGCGTGCAGATCAACAAACTGATGTAT 19261 Query 9811 GAGCGCCTGGTGAA 9824 |||| ||||| || Sbjct 19260 CAGCGTCTGGTTAA 19247 >seq6040 Length=129903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 83207 TGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAACC 83266 ||||| ||| ||||||||||||||| |||||| ||||||||||||| |||||||||| Sbjct 118352 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAAGCGATTATGAGTCGCGTGCTCTAACC 118293 Query 83267 -ACTGAGCTACGGGGCC 83282 ||||||||| |||||| Sbjct 118292 AACTGAGCTAAGGGGCC 118276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520278143119200