Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq14905 149 7e-31 seq2788 136 4e-27 seq2551 100 3e-16 >seq14905 Length=119551 Score = 149 bits (164), Expect = 7e-31 Identities = 141/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || || || || || ||||||||||| |||||||||| || || |||||||| | || Sbjct 42280 GGGGGGCAGCATCTTAACGTTAACGTCATGCGTCGTGAGACGCTCGAAGATGCGATAAAA 42339 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 ||||| || || ||||||||| |||| |||||||| || || || || || || |||||| Sbjct 42340 CATCCTGAGAAGTATCCTCAGTTGACTATCCGTGTCTCGGGGTACGCCGTGCGTTTTAAC 42399 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 || |||| || |||||||||| ||||| ||| ||||||| || ||| |||| || ||| Sbjct 42400 TCGTTGACGCCGGAACAGCAGCAGGACGTGATCACTCGTACTTTCACTCAGAGCCTGTAA 42459 >seq2788 Length=136445 Score = 136 bits (150), Expect = 4e-27 Identities = 299/441 (68%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 27212 CGTTTTTATGATGCCGTTTCTACTCATCAAG-TTTCATTGCCTACTCCAATTATGGCAGG 27270 ||||| |||||||| ||||| || | ||||| |||| ||||||| ||||||||| | || Sbjct 19710 CGTTTCTATGATGCGGTTTCAAC-CTTCAAGATTTCTCTGCCTACGCCAATTATGTCCGG 19652 Query 27271 TGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTT 27330 | || || || |||||||||||| ||| ||| | || || ||| || | Sbjct 19651 CGTGCGCACCCCGACTCGCCAGTTCAGCTCTTGCGTACTGATCGAGTGCGGCGACAGCCT 19592 Query 27331 AAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACGAGCTGGTA 27389 | || || ||| || || ||| || | | |||| |||| | || || |||| Sbjct 19591 GGACTCCATCAACGCGACCTCCAGCGCCA-TCGTGAAATACGTTTCACAGCGCGCAGGTA 19533 Query 27390 TAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAG--T 27447 | || ||||||| ||| | ||||| ||| ||| | ||||||| | Sbjct 19532 TCGGCATCAACGCTGGCCGCATCCGTGCGCTGGGTAGCCCGATTCGCGGCGGTGAAGCAT 19473 Query 27448 TCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTC 27507 || ||||| || ||| || |||| || || ||||| || || || ||||| || || Sbjct 19472 TC--CATACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACGGCGGTTAAATCCTGCTC 19415 Query 27508 TCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGT 27567 ||| || || | || || |||||||| || || || |||||||||||| | ||||| Sbjct 19414 TCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCGATGTGGCACCTGGAAGT 19355 Query 27568 AGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATAT 27627 || | ||| | ||||||||||| || ||||| || | ||||| |||| || || Sbjct 19354 TGAAAGCCTGCTGGTTCTGAAAAACAACCGTGGTGTTGAAGGCAACCGCGTTCGTCACAT 19295 Query 27628 GGACTACGGAATTCAGATTAA 27648 ||||||||| | ||||| || Sbjct 19294 GGACTACGGCGTGCAGATCAA 19274 >seq2551 Length=53185 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 || ||||| || |||||||||||||| || || || | ||| || || | | Sbjct 36937 GGCGGTCAGCATCTGAACGTTAACGTAATGAACCGCGAGATGCTGCTGGAGGCCATGGAA 36996 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 |||| || |||| ||||||||||| ||||| || || || ||||| || ||||| ||| Sbjct 36997 AATCCTGAGAAATTCCCTCAGCTGACTATCCGCGTTTCAGGCTATGCGGTACGCTTCAAC 37056 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACT 108589 || || || ||||||||||| ||||| || | |||||||||||| Sbjct 37057 TCACTAACCAAAGAACAGCAGCAGGACGTGATTACCCGTACCTTTACT 37104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540205048361280