Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024204.1 Length=42764 Score E Sequences producing significant alignments: (Bits) Value seq139038 150 5e-32 >seq139038 Length=11747 Score = 150 bits (166), Expect = 5e-32 Identities = 672/1059 (63%), Gaps = 49/1059 (5%) Strand=Plus/Minus Query 30232 CCGGCGCGGAACGTATCAAGCGCGGTTTCTTCACCAGCCAGCCACGCAAGCCCACGGCCT 30291 ||||| ||||| || || ||| | | |||||||| || ||||| || | |||||| || Sbjct 7978 CCGGCACGGAATGTCTCGAGCACAGACTCTTCACCTGCAAGCCATGCCAACCCACGCCCC 7919 Query 30292 TCGACGTTAGAGTAATCCGCAACAACAAACTTACGCCCGGCTTCCGGG---ATAATGCAG 30348 || ||||||| ||| || |||||||| | ||| | ||||||| ||||| || Sbjct 7918 TCAACGTTAGCGTAGTCGGCAACAACCAGCTTCATC---GCTTCCGCTGCAATAATACAA 7862 Query 30349 CTTCGGACGGTAGACGCTGTTAGCTTGGCCACATCAAAACGGCGGTGTGCACGGCCTTTA 30408 |||||| || || || ||||||||||| | ||| | | | | || ||| | Sbjct 7861 GATCGGACCGTCGATGCCGTTAGCTTGGCGATATCGTAGCAGTTCTCCGCTTTACCTCGA 7802 Query 30409 AGTAACGCGGCAATACCC----------CTATCCAGTT----CA-------------TCG 30441 |||| | |||| | || | | || || ||| Sbjct 7801 AGTAGTGACTCAATCGCGAGTGACAAGTCTTTTGACTTGGGCCAAGGCTTTTCTGGGTCG 7742 Query 30442 TCGTGATAATACCCGCGCGCCAGGTTTTGCGGCTGAAAACCTTTCCCCGCCCACCGCAAT 30501 ||||| |||||||| || || || || ||||| ||||| ||| ||| ||||| | | Sbjct 7741 TCGTGGTAATACCCACGTGCAAGATTCTGCGGTTGAAAGCCTCGCCCAGCCCATCTTAGG 7682 Query 30502 GTTCGCTTCGCTCCTCCGTATTGCAGGCAACCACGGCGGCGGTCATCTGAAGAACGGCCT 30561 |||||||| || || || ||||| || ||||| ||||| ||| | || | || | || Sbjct 7681 GTTCGCTTGGCGCCACCATATTGAAGACAACCCCGGCGCCGGCCGTCGGCGGACAGACCC 7622 Query 30562 AACAGCAACGGCGCGTATTTCGTCGATGCGGTAGAAGCAGCCCCGAGACGCATCTCGATA 30621 | | ||| |||||| |||||||| || || || || ||||| ||||| || || Sbjct 7621 TCGATAAGTGGCTTGTATTTTGTCGATGCCGTTGACGCTGCGCCGAGGCGCATTTCAATG 7562 Query 30622 ATAGTGCGGGCGTCGTCCGGTAAATCCTCATCCGCCAGCAAATCGTTTAGTGTTGACTTC 30681 ||| |||||| ||||| || | ||| ||| | |||| || | | |||| Sbjct 7561 ATAACGCGGGCTTCGTCTGGGAGATCTGGATCTTCTAGCAGGTCCAGCAAGACCGCCTTC 7502 Query 30682 TGTGCGTTGTGAATGCGGTGCGCCGGCGCCAGTTCCTGTAAAATAGGCAAGAAGTCTTTG 30741 || || || | | | ||||||||| || || | | || |||| ||| || Sbjct 7501 TGGGCATTCGGTACGGTGTGCGCCGGGGCTAGACCGCGCAATGCCGGCAGGAAATCCGCA 7442 Query 30742 CCGGTTAGTGAACC---GCCGTATTTGCGTTGGGCTTCTTCCTGTAGCTCTTCCTTGTGG 30798 ||||| || ||| |||||||||| || || | | || |||| ||| || Sbjct 7441 CCGGTAAG---ACCTGAGCCGTATTTGGCCATAGCCTCGGCTTTAAGTTCTTTCTTATGC 7385 Query 30799 CGCGTCACTGCTTCAATTGCGGCCTCAGCGAGGGCAACGTCAACCTTAAATCCGCGGTCG 30858 | | || | | ||| ||| || | || || | ||| || ||||| Sbjct 7384 TCCTGTATGGCCTGTACCGCGCAACGAGCAAGCTCGGTATCGACGTAAAACCCTCGGTCA 7325 Query 30859 TTAATTACTTGGTCTAACCAC-AGCACGCGGTCTTCGAACTCAG---AATTCCCCCACTT 30914 ||||| | ||||| || ||| | | |||| ||| | ||| | | |||| | | Sbjct 7324 TTAATGATCTGGTC-AAGCACTAAGATCCGGTTTTCAATCTCCGTGGAGTTCC---ATGT 7269 Query 30915 CGGCATTTTCTTATACACTTCACGCATAGACGTAATGTCGCTTTTTGCGTATGCGATAAA 30974 |||| | | | | ||||||||||| || || |||| |||||| | | ||| Sbjct 7268 TGGCAGTCGGTAGAAGGCCTCACGCATAGAAGTGATATCGCGCCGTGCGTAGTCTACAAA 7209 Query 30975 TTCTGCCCACTCTTTTGGGTGGGTATCGGCGGTATATCGTCGAATCTTATAGTTCTTAGG 31034 | ||| |||| ||||| || | || || || || ||||| || |||||||| Sbjct 7208 GCGTTTCCATTCTTCGGGGTGCGTCTGCTTTGTGTAGCGCCGTATCTTGTAATTCTTAGG 7149 Query 31035 CGTAGGCTTACTGAACCGCTGTATGAGCGCCTTACCGCGTTTATCCTTAGCCATGCT-TG 31093 ||| || |||| ||| ||||| || | ||||||||| ||||| || || | ||| Sbjct 7148 CGTGGGTTTACAGAAGCGCTGGATCAACGCCTTACCCGCCTTATCTTTGGCGA-GCTCCA 7090 Query 31094 CGTCAATGTTTAAAACCTCACACAGCGTGGCCAGTGAACCCGGGAGGGCATGTCGGAACG 31153 || || ||||| || || || || | | || |||||||| | || | |||| | | Sbjct 7089 CGGGAACGTTTAGCACTTCGCAGAGTTTCTCGAGCGAACCCGGCAACGCGTATCGGTAGG 7030 Query 31154 CTACTATCATAGTGTCTATAATGTTTTCTACCAGGAGTTCGAACCCCCAGCAATGCTTAA 31213 | | | ||| ||||| || |||| || ||| ||| ||||| || | | | Sbjct 7029 CCTCGACCATTGTGTCGATGATGTGCTCGGGTGGGATCGCGATACCCCAACAGTTCGACA 6970 Query 31214 TAACTGGTCGGTCGAACATAAGGAAGTTTTGGCCTACCA 31252 || |||| ||||||||| | |||||||||||| |||| Sbjct 6969 GCACAGGTCTGTCGAACATTAAGAAGTTTTGGCCCACCA 6931 Score = 138 bits (152), Expect = 3e-28 Identities = 733/1145 (64%), Gaps = 48/1145 (4%) Strand=Plus/Minus Query 25451 TGGCCAGCCTGTTTCTGGCGTACAGGACCTATACGCTCGACAACCTGCAAATAGTGCTCC 25510 ||||| ||||| | || || || || ||||| || ||||| | |||| |||||| ||| Sbjct 10774 TGGCCCGCCTGATGTTGTCGCACTGGCCCTATTCGTTCGACGATCTGCGAATAGTATTCC 10715 Query 25511 AGGTTCCAGCCTTGCGAAATAAACG-CCAGATGATGGCCGCCGTCCTGTAAATTCAAGCC 25569 | |||||| | | | | ||||| ||||||| || |||||||| || || || | ||| Sbjct 10714 AAGTTCCA-CGTATCACTAAAAACGGCCAGATGGTGTCCGCCGTCTTGCAAGTTAAGGCC 10656 Query 25570 ATGCCCGGCTGACGCAGGGTGCACGCACAAAATCTCGATTTCCCCGCGGTTCCAAGATTC 25629 |||||||| || ||||| | | | || ||| | ||| ||||||| || Sbjct 10655 GTGCCCGGCGCTGGCCGGGTGAGCCAATAGCATAGGGATCTTCCCTTGGTTCCACAGCTC 10596 Query 25630 CATCT-GCTTATTACCCTTAGCACCTTTCGCAAACGCCTGCGCCTGGGGGAATCGCCTAA 25688 || | || || | || |||||| | | ||| |||| ||||||| | | | Sbjct 10595 GATATTGCGGGTTGCGGTTTT-ACCTTTGCCCAGTGCCACGGCCTCGGGGAATTTCTTCA 10537 Query 25689 GAATGCGCTCAAGTTCGTGCTTGAACTGATAGGCCACCAGCAGCGGCGCCCCCTGCAACT 25748 | ||||| || | || || | | ||||||||| | ||| ||||| || | | || Sbjct 10536 GGATGCGTTCCCGGTCATGGCGATAGTAATAGGCCACTAACAGTGGCGCACCGTTGAGCT 10477 Query 25749 CCTCGACAATGGACTCTAATGCATCTAGTTTCGCGTCGTGCACTTTCTCCCAGTCTTTCG 25808 | || ||| ||||| | || || || ||| ||| || | ||||||||| | Sbjct 10476 CTTCATAAATAGACTCGAGCGCGTCCAGCTTCTCGTTATGAATAAGCTCCCAGTCACCTG 10417 Query 25809 TTGCTTCACCATCCGGCCCTGACACATACACGGCGCCTGATGCAATCTGCAAACACTTCG 25868 | | ||||| || | | | |||||| ||||| || || || |||||||| || || | Sbjct 10416 TCGGCTCACCGTCGGCGTCGGTCACATAAACGGCACCGGAAGCTATCTGCAAGCATTTAG 10357 Query 25869 ACGTCTTCGCCGCAGCGTTAGCCGCTTCAACTTCTCCGCTC-TCCAGTTCCGCGAATAAC 25927 |||||| ||||| || ||| | || || |||| ||| ||| || || || || | | Sbjct 10356 CCGTCTTGGCCGCCGCATTAACGGCGTCGACTT-TCCCCTCATCGAGATCGGCCTTCAGC 10298 Query 25928 TTCTCCTCCATATCGATGTAAGCCTGGCGTGCTTTCTTAGGCAGGTCAATTTCAACCGGC 25987 || | |||||||| || | | | ||||| ||||||| | | ||| Sbjct 10297 AGCTTCACCATATCGTCATAGACTTTTTGCGCTTTACGGGGCAGGTAGACCGGACGCGGA 10238 Query 25988 ACGATAACAGGCTCTTCACAACCGAACCACTCAGCAGCATCAATGGTCAGGCTGATATCC 26047 || | || | ||||||||||||||| | | || || || | ||||| ||| || Sbjct 10237 ACTACAATCGCCTCTTCACAACCGAAGTATTTAGACGCGTCTACCGTCAGCGAGATGTCG 10178 Query 26048 TTCATCTTCTGATGAAT-CTCTTTATCCGCGCCTGGGC--GGGCGTG-GTACTCCCGCGC 26103 || |||| || | || | || | || ||| ||| || | || | ||| Sbjct 10177 GCCAATGCACGATGTATGCGCTGT-TCTG-ATCTCGGCATGGGTATGAGGTCTACGGCGT 10120 Query 26104 CATCGCAGATTTGCCTTTCTGTACCGAGCTAAACCATCTATCGGTAAAGGCCGTGTATGA 26163 | || | | | |||| || |||| | || | | || | || || ||| | || Sbjct 10119 ATTTGCTG--TCGGCTTTTTGCTTCGAGGTGAAATACCGGTCTTTGAACGCGGTGAAAGA 10062 Query 26164 AGAACCGAGGCGCTCACCAGCGTCTATAAACCAGTTCTGACCCCACAAGTCCTTTAGACC 26223 | || || ||| | ||||| ||||||||||||||||||||||| | ||||| || || Sbjct 10061 TGTGCCCAGACGCGCGCCAGCATCTATAAACCAGTTCTGACCCCAAAGATCCTTGAGCCC 10002 Query 26224 GTTCGGCGACGGCGTACCGGTCAGGTT-----AAT----GA----AACGCTTAACTTTAC 26270 ||| | | |||||||| || | ||| ||| || |||| | ||| | Sbjct 10001 GTTTGTAGCGGGCGTACCCGTTAAGTTCCACCAATACCGGACTTTGACGCCT--TTTTTC 9944 Query 26271 CGA-ACGCCACCTTACTAAGCGCCCTCGCCCTCTTGCTCCCGCCAGAACGGCTACGGAAC 26329 | || | || | ||| || | || | || |||||| ||| | |||||| Sbjct 9943 TTATGGGCGATTTTGCCAAGAGCACGGGCGCGTTTAGACCCGCC---ACGCGTTCGGAAC 9887 Query 26330 GATTTCAGCTTCGTGCTCTCATCGGCAACGATAACGGTAAAAGGCCAGTCGTCTTTGCCG 26389 || || ||||| || || |||||||||| ||||||||| ||||| ||||| || Sbjct 9886 GACTTAAGCTTTGTCGATTCGTCGGCAACGACAACGGTAAAGGGCCAATCGTC---ACCA 9830 Query 26390 TAGTAGTCAATAAGCCATTCTATGACTTCGTAATTTGTGCAAACCACGTTAGCGTCTGAC 26449 ||| | | | ||||||| || ||||| || || ||||||||| | || | Sbjct 9829 AGGTATTGCACCAACCATTCTGCGATATCGTAGTTACAACACACCACGTTATC--CTTA- 9773 Query 26450 TCCAGCG---CCGCGATGCGTCGCT--TCT-CAGAACCAGTTGCATCTACTACACTCAGA 26503 || ||| | | ||| || | || | | || || | || || || ||| Sbjct 9772 -CCGGCGAGTACTTGTTGC--CGATAGGCTACTGGCCCGGTGCCGTCGACGACTTGCAGT 9716 Query 26504 CACGGGAAGTTCCATTTCTCTTGTTCTGCGGGCCACGTACCTGACGCAACGCGCAACGGG 26563 || || |||||| ||||| ||| |||||||||| | ||||||||||||| ||| Sbjct 9715 GCGGGAAACCCCCATTTGTCTTGCTCTCCGGGCCACGTCGCGGACGCAACGCGCAGCGGC 9656 Query 26564 GCGAG 26568 ||||| Sbjct 9655 GCGAG 9651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136497446582952